Energy transduction in KInetically asymmetric catalytic NETworks

ERC (European Research Council)HORIZON-ERCID: 101041933
EC Contribution
€17,867
Consortium Size
2 orgs
Start Year
2022
Summary

Endergonic processes are central to Life. They are achieved by enzymes, that change conformation during their catalytic cycle. Thus, biological non-equilibrium processes are catalysis-driven. The realization of catalysis-driven processes in artificial systems proved challenging. It remains limited to synthetically demanding interlocked structures, which were upgraded with catalytic features affecting ring sliding motion.With KI-NET, I want to develop a general biomimetic strategy enabling endergonic processes driven by chemical catalysis. I plan to invert the current approach by introducing defined conformational freedom into simple catalytic units.KI-NET scientific objectives go beyond state of the art in chemically-driven non-equilibrium systems, with the aim to:(i) establish an unconventional theoretical approach based on “effective transition states”, that guides experiments and reveals common underlying principles for catalysis-driven processes and chemical oscillations;(ii) realize endergonic conformation changes powered by catalytic processes, including ATP hydrolysis;(iii) promote endergonic assembly reactions, that will reveal how energy consumption directs chemical adaptation;(iv) realize an artificial synthase: a catalyst that harvests energy from one reaction and uses it to drive a different one.I will implement a theory-guided experimental approach at the interface between systems chemistry and molecular machines. Leveraging my broad chemistry background, I will address questions that expand towards physics – in terms of formalizing models – and biology – in terms of operating systems to be imitated and unraveled.Realizing KI-NET allows overcoming thermodynamic boundaries. Unforeseen opportunities become possible in material science and energy management, such as the realization of artificial mitochondria. Indeed, KI-NET pioneers a largely unexplored area of science at the roots of dissipative systems, complex phenomena, and –ultimately, Life.

Consortium (2)

Project Results (10)

Source: CORDIS, the EU research results database.

Publications (10)
Angewandte Chemie - International Edition
Angewandte Chemie International Edition· 2025DOI
S. Yahaya, S. Amano, F. Nicoli, G. Ragazzon
Catalysis‐driven Active Transport Across a Liquid Membrane
Angewandte Chemie International Edition· 2025DOI
Kaiyuan Liang, Federico Nicoli, Shaymaa Al Shehimy, Emanuele Penocchio, Simone Di Noja, Yuhan Li, Claudia Bonfio, Stefan Borsley, Giulio Ragazzon
Analysis of kinetic asymmetry in a multi-cycle reaction network establishes the principles for autonomous compartmentalized molecular ratchets
Chem· 2024DOI
Emanuele Penocchio, Ahmad Bachir, Alberto Credi, Raymond Dean Astumian, Giulio Ragazzon
Artificial Molecular Ratchets: Tools Enabling Endergonic Processes
Angewandte Chemie International Edition· 2024DOI
Thitiporn Sangchai, Shaymaa Al Shehimy, Emanuele Penocchio, Giulio Ragazzon
Beyond Single‐Cycle Autonomous Molecular Machines: Light‐Powered Shuttling in a Multi‐Cycle Reaction Network
Angewandte Chemie International Edition· 2024DOI
Zhiyao Yang, Xirui Wang, Emanuele Penocchio, Giulio Ragazzon, Xinnan Chen, Shuai Lu, Yidan Zhou, Kuirong Fu, Zejiang Liu, Yimin Cai, Xiujun Yu, Xiaopeng Li, Xiaowei Li, Wen Feng, Lihua Yuan
Direct Observation of Polaritonic Chemistry by Nuclear Magnetic Resonance Spectroscopy
Angewandte Chemie International Edition· 2024DOI
B. Patrahau, M. Piejko, R. J. Mayer, C. Antheaume, T. Sangchai, G. Ragazzon, A. Jayachandran, E. Devaux, C. Genet, J. Moran, T. W. Ebbesen
Progressive Endergonic Synthesis of Diels–Alder Adducts Driven by Chemical Energy
Angewandte Chemie International Edition· 2024DOI
Shaymaa Al Shehimy, Hai‐Dang Le, Shuntaro Amano, Simone Di Noja, Luca Monari, Giulio Ragazzon
Control over Dethreading Kinetics Allows Evaluating the Entropy Stored in an Interlocked Molecular Machine Out‐of‐Equilibrium**
Chemistry – A European Journal· 2023DOI
Simone Di Noja, Marina Garrido, Lorenzo Gualandi, Giulio Ragazzon
Kinetic Barrier Diagrams to Visualize and Engineer Molecular Nonequilibrium Systems
Small· 2023DOI
Emanuele Penocchio, Giulio Ragazzon
Photochemical Bromination of 2,5‐Dimethylbenzoic Acid as Key Step of an Improved Alkyne‐Functionalized Blue Box Synthesis**
European Journal of Organic Chemistry· 2023DOI
Ahmad Bachir, Fabiana Ciocchetti, Daniel P. Couto, Simone Di Noja, Cristian Pezzato, Giulio Ragazzon