The molecular basis of conductive and vascular tissue development in plants

ERC (European Research Council)HORIZON-ERCID: 101043257
EC Contribution
€19,997
Consortium Size
1 orgs
Start Year
2023
Summary

Plants contribute up to 80% of all biomass on earth. Despite their staggering diversity; dominant land plants share a highly important characteristic: the presence of a vascular system providing physical support and long distance transport. This is however not a simple binary trait, as some non-vascular mosses contain cells with conductive capacity resembling that of vascular plants. Available evidence indeed suggests that conductive tissues of non-vascular plants are functionally homologous to vascular tissues in vascular plants and can even be compared at a molecular level. However, the molecular players involved in conductive tissue development remain almost completely unknown. Moreover, although key molecular regulators of vascular tissue development have been identified in the model plant Arabidopsis, very few are shown to be functionally conserved across vascular plants. Despite their importance for growth and development, we thus have a limited understanding of the evolutionary conserved regulators of plant plumbing systems.In PIPELINES, I will consolidate my expertise in single-cell applications and build a dedicated team to identify conserved molecular players specific to vascular and conductive tissues by combining multi-species comparative single-cell and spatial transcriptomics with gene regulatory network inference; and characterize these factors using loss-of-function approaches. By comparing this data, I will determine the ancestral set of regulators sufficient to trigger specification and differentiation events in plants; and validate these through introduction of single-cell sample multiplexing in a heterologous system.By unravelling the molecular basis of vascular and conductive tissue development and identifying conserved core developmental regulators, the output of PIPELINES will act as a starting point for targeted engineering of vascular tissues; which holds great potential for improving plant biomass and productivity in crop species.

Consortium (1)

Project Results (7)

Source: CORDIS, the EU research results database.

Publications (6)
A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators
Cell Reports· 2025DOI
Yuji Ke, Vincent Pujol, Jasper Staut, Lotte Pollaris, Ruth Seurinck, Thomas Eekhout, Carolin Grones, Maite Saura-Sanchez, Michiel Van Bel, Marnik Vuylsteke, Andrea Ariani, Christophe Liseron-Monfils, Klaas Vandepoele, Yvan Saeys, Bert De Rybel
Dual and spatially resolved drought responses in the Arabidopsis leaf mesophyll revealed by single‐cell transcriptomics
New Phytologist· 2025DOI
Rubén Tenorio Berrío, Eline Verhelst, Thomas Eekhout, Carolin Grones, Lieven De Veylder, Bert De Rybel, Marieke Dubois
KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death
The Plant Cell· 2025DOI
Nicolas M Doll, Yannick Fierlej, Thomas Eekhout, Lisa Elias, Clément Bellot, Geng Sun, Carolin Grones, Stijn Aesaert, Griet Coussens, Riet De Rycke, Maria Šimášková, Emilie Montes, Chloé Plagnard, Peter M Rogowsky, Yemisrach Melkie Abebaw, Mohammed Bendahmane, Bert De Rybel, Laurens Pauwels, Thomas Widiez, Moritz K Nowack
The dynamic and diverse nature of parenchyma cells in the Arabidopsis root during secondary growth
Nature Plants· 2025DOI
Munan Lyu, Hiroyuki Iida, Thomas Eekhout, Meeri Mäkelä, Sampo Muranen, Lingling Ye, Anne Vatén, Brecht Wybouw, Xin Wang, Bert De Rybel, Ari Pekka Mähönen
Plant Cell
The Plant Cell· 2024DOI
Carolin Grones, Thomas Eekhout, Dongbo Shi, Manuel Neumann, Lea S Berg, Yuji Ke, Rachel Shahan, Kevin L Cox Jr, Fabio Gomez-Cano, Hilde Nelissen, Jan U Lohmann, Stefania Giacomello, Olivier C Martin, Benjamin Cole, Jia-Wei Wang, Kerstin Kaufmann, et al
Scywalker: Scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing
Bioinformatics· 2024DOI
Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems, Lara De Deyn, Lena Duchateau, Carolin Grones, Thomas Eekhout, Tim De Pooter, Geert Joris, Stephane Rombauts, Bert De Rybel, Rosa Rademakers, Frank Van Breusegem, Mojca Strazisar, Kristel Sleegers, Wouter De Coster
Other Results (1)
Periodic Reporting for period 1 - PIPELINES (The molecular basis of conductive and vascular tissue development in plants)