Hydrogen Bond Networks as Optical Probes

ERC (European Research Council)HORIZON-ERCID: 101043272
EC Contribution
€15,235
Consortium Size
1 orgs
Start Year
2022
Summary

Fluorescence takes place throughout the natural world. Most conventional chemical wisdom proposes that in organic entities, fluorescence occurs in conjugated systems, such as in the aromatics. However, in biological settings, the interaction of light with matter occurs in media built up of dense networks of hydrogen bonds. Recent experiments suggest that it is possible to observe fluorescence from these networks too. This could open the possibility of designing hydrogen-bond networks with enhanced fluorescence, offering enormous fundamental and practical potential.The overarching goal of HyBOP is to decipher, using advanced computer simulations, the exotic optical properties of hydrogen-bond networks and to harness them as probes of water-mediated forces. To achieve this, HyBOP will tackle the following challenges:1) Establish the ground rules for creating fluorescent hydrogen-bond networks in biological materials. 2) Understand how to drive the electrons and nuclei of water networks into regimes where they can fluoresce. 3) Use the optical behaviour of these networks to probe hydrophobic forces in nature. To uncover the complex chemistry of hydrogen-bond network fluorescence, and guide the discovery of new fluorophores, we will deploy state of the art electronic excited-state molecular dynamics in combination with machine-learning techniques. This will provide HyBOP with ground-breaking knowledge which will lay a theoretical framework to motivate development of new experimental probes of hydrophobicity.HyBOP seeks to bring hydrogen-bond networks to the forefront of chemistry in their use as optical probes; by laying the theoretical ground-work for designing non-invasive fluorophores in biophysics, opening up a new window into the origins of autofluorescence in medical diagnostics and finally, provoking frontier electron and nuclear spectroscopy, HyBOP will have a spill-over effect and build new synergies across several branches of the physical sciences.

Consortium (1)

Project Results (19)

Source: CORDIS, the EU research results database.

Publications (19)
Aqueous solution chemistry<i>in silico</i>and the role of data-driven approaches
Chemical Physics Reviews· 2024DOI
Debarshi Banerjee, Khatereh Azizi, Colin K. Egan, Edward Danquah Donkor, Cesare Malosso, Solana Di Pino, Gonzalo Díaz Mirón, Martina Stella, Giulia Sormani, Germaine Neza Hozana, Marta Monti, Uriel N. Morzan, Alex Rodriguez, Giuseppe Cassone, Asja Jelic, Damian Scherlis, Ali Hassanali
Beyond Local Structures in Critical Supercooled Water through Unsupervised Learning
The Journal of Physical Chemistry Letters· 2024DOI
Edward Danquah Donkor, Adu Offei-Danso, Alex Rodriguez, Francesco Sciortino, Ali Hassanali
Dissecting the hydrogen bond network of water: Charge transfer and nuclear quantum effects
Science· 2024DOI
Mischa Flór, David M. Wilkins, Miguel de la Puente, Damien Laage, Giuseppe Cassone, Ali Hassanali, Sylvie Roke
Evidence of ferroelectric features in low-density supercooled water from ab initio deep neural-network simulations
Proceedings of the National Academy of Sciences· 2024DOI
Cesare Malosso; Natalia Manko; Maria Grazia Izzo; Stefano Baroni; Ali Hassanali
Exploring the Mechanisms behind Non-aromatic Fluorescence with the Density Functional Tight Binding Method
Journal of Chemical Theory and Computation· 2024DOI
Gonzalo Daz Mirn; Carlos R. Lien-Medrano; Debarshi Banerjee; Uriel N. Morzan; Michael A. Sentef; Ralph Gebauer; Ali Hassanali
Nature Communications
Nature Communications· 2024DOI
S. Pullanchery; S. Kulik; T. Schönfeldová; C. K. Egan; G. Cassone; A. Hassanali; S. Roke
Non-adiabatic Couplings in Surface Hopping with Tight Binding Density Functional Theory: The Case of Molecular Motors
Journal of Chemical Theory and Computation· 2024DOI
Gonzalo Díaz Mirón, Carlos R. Lien-Medrano, Debarshi Banerjee, Marta Monti, Bálint Aradi, Michael A. Sentef, Thomas A. Niehaus, Ali Hassanali
Revisiting the Enhanced Chemical Reactivity in Water Microdroplets: The Case of a Diels–Alder Reaction
Journal of the American Chemical Society· 2024DOI
Ke Gong, Abhijit Nandy, Zhexuan Song, Quan-Song Li, Ali Hassanali, Giuseppe Cassone, Shibdas Banerjee, Jing Xie
The Joint Solvation Interaction
Entropy· 2024DOI
Ali Hassanali, Colin K. Egan
Do Machine-Learning Atomic Descriptors and Order Parameters Tell the Same Story? The Case of Liquid Water
Journal of Chemical Theory and Computation· 2023DOI
Edward Danquah Donkor, Alessandro Laio, Ali Hassanali
Effect of Quantum Delocalization on Temperature Dependent Double Proton Transfer in Molecular Crystals of Terephthalic Acid
The Journal of Physical Chemistry B· 2023DOI
Unmesh Mondal; Ivan Girotto; Ali Hassanali; Prasenjit Ghosh
Journal of Chemical Physics
The Journal of Chemical Physics· 2023DOI
Colin K. Egan; Ali Hassanali
Nature Communications
Nature Communications· 2023DOI
Adu Offei Danso, Uriel N Morzan, Alex Rodriguez, Ali Hassanali and Asja Jelic
Nature Communications
Nature Communications· 2023DOI
Gonzalo Díaz Mirón; Jonathan A. Semelak; Luca Grisanti; Álex Rodríguez; Irene Conti; Martina Stella; V. Jayaramakrishnan; Nicola Seriani; Nađa Došlić; Ivan Rivalta; Marco Garavelli; Darío A. Estrı́n; Gabriele S. Kaminski Schierle; Mariano C. González Lebrero; Ali Hassanali; Uriel N. Morzan
Scientific Reports
Scientific Reports· 2023DOI
Loos, Sarah A.M; Arbah, Saeed; Rajabpour, Ali; Hassanali, Ali. A; Roldan, Edgar
Solvation thermodynamics from cavity shapes of amino acids
PNAS Nexus· 2023DOI
Khatereh Azizi; Alessandro Laio; Ali Hassanali
Water Self‐Dissociation is Insensitive to Nanoscale Environments
Angewandte Chemie· 2023DOI
Solana Di Pino, Yamila A. Perez Sirkin, Uriel N. Morzan, Verónica M. Sánchez, Ali Hassanali, Damian A. Scherlis
Zirconium Coordination Chemistry and Its Role in Optimizing Hydroxymate Chelation: Insights from Molecular Dynamics
ACS Omega· 2023DOI
Giulia Sormani, Aruna Korde, Alex Rodriguez, Melissa Denecke, Ali Hassanali
ZundEig: The Structure of the Proton in Liquid Water from Unsupervised Learning
The Journal of Physical Chemistry B· 2023DOI
Solana Di Pino, Edward Danquah Donkor, Veronica M. Sánchez, Alex Rodriguez, Giuseppe Cassone, Damian Scherlis, Ali Hassanali