leveraging the European compute infrastructures for data-intensive research guided by FAIR principles
Research InfrastructuresHORIZON-RIAID: 101057388
EC Contribution
€35,311
Consortium Size
18 orgs
Start Year
2022
▶Summary
In the past decade, many scientific domains have been transformed into data-driven disciplines relying on the exchange and integration of internationally distributed data. Exploiting this data is still a laborious and largely manual task, prone to losses and errors, and increasingly specialised beyond most users technical capabilities. FAIR practices are encouraged but their adoption curve is steep. The needs for compute and data resources, tools, and application platforms are often domain-specific. Many scientists struggle to navigate this intricate ecosystem. Generally, researchers do not possess the computing skills to effectively use the HPC or Cloud platforms they need. Thus, new approaches are needed to enable all researchers, with widely ranging digital skills, to efficiently use the diverse computational infrastructures available across Europe, for asynchronous and for interactive applications.EuroScienceGateway will leverage a distributed computing network across 13 European countries, accessible via 6 national, user-friendly web portals, facilitating access to compute and storage infrastructures across Europe as well as to data, tools, workflows and services that can be customized to suit researchers' needs. At the heart of the proposal workflows will integrate with the EOSC-Core. Adoption, development and implementation of technologies to interoperate across services, will allow researchers to produce high-quality FAIR data, available to all in EOSC. Communities across disciplines - Life Sciences, Climate and Biodiversity, Astrophysics, Materials science - will demonstrate the bridge from EOSC?s technical services to scientific analysis.EuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research, contributing an innovative and customizable service for EOSC that enables operational open and FAIR data and data processing, empowering European researchers to embrace the new digital age of science.
Consortium (18)
🇩🇪 ALBERT-LUDWIGS-UNIVERSITAET FREIBURGDE
coordinator🇵🇱 AKADEMIA GORNICZO-HUTNICZA IM. STANISLAWA STASZICA W KRAKOWIEPL
partner🇪🇸 BARCELONA SUPERCOMPUTING CENTER CENTRO NACIONAL DE SUPERCOMPUTACIONES
partner CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
partner🇨🇿 CESNET ZAJMOVE SDRUZENI PRAVNICKYCH OSOBCZ
partner CONSIGLIO NAZIONALE DELLE RICERCHE
partner🇨🇭 ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNECH
partner🇮🇹 ISTITUTO NAZIONALE DI FISICA NUCLEAREIT
partner🇳🇱 STICHTING EGINL
partner🇬🇧 THE UNIVERSITY OF MANCHESTERGB
partner🇹🇷 TURKIYE BILIMSEL VE TEKNOLOJIK ARASTIRMA KURUMUTR
partner🇬🇧 UNITED KINGDOM RESEARCH AND INNOVATIONGB
partner🇮🇹 UNIVERSITA DEGLI STUDI DI FIRENZEIT
partner🇪🇸 UNIVERSITAT DE BARCELONAES
partner🇫🇷 UNIVERSITE PARIS CITEFR
partner🇳🇴 UNIVERSITETET I OSLONO
partner🇸🇰 USTAV INFORMATIKY SLOVENSKEJ AKADEMIE VIED, VEREJNA VYSKUMNA INSTITUCIASK
partner🇧🇪 VIB VZWBE
partnerProject Results (123)
Source: CORDIS, the EU research results database.
▶Publications (112)
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
· 2025
Anup Kumar
An Ecosystem of Services for FAIR Computational Workflows
Wilkinson; Gustafsson; Bacall; Belhajjame; Capella; Fernandez Gonzalez; Fosso Tande; Gadelha; Garijo; Grubel; Grüning; Khan; Kanwal; Leo; Owen; Pireddu; Pouchard; Rodríguez-Navas; Serrano-Solano; Soiland-Reyes; Vilne; Williams; Wouters; Coppens; Goble
Analyse Argo data
· 2025
Marie Josse
Applying the FAIR Principles to computational workflows
Sean R. Wilkinson; Meznah Aloqalaa; Khalid Belhajjame; Michael R. Crusoe; Bruno de Paula Kinoshita; Luiz Gadelha; Daniel Garijo; Ove Johan Ragnar Gustafsson; Nick Juty; Sehrish Kanwal; Farah Zaib Khan; Johannes Köster; Karsten Peters-von Gehlen; Line Pouchard; Randy K. Rannow; Stian Soiland-Reyes; Nicola Soranzo; Shoaib Sufi; Ziheng Sun; Baiba Vilne; Merridee A. Wouters; Denis Yuen; Carole Goble
Automating Galaxy workflows using the command line
· 2025
Simon Bray, Wolfgang Maier
Breaking myths: The reality of Galaxy’s capabilities and impact
JOBIM 2025 - Journées Ouvertes en bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux, France.· 2025
Gildas Le Corguillé, Anthony Bretaudeau, Björn Grüning, Wendi Bacon, Bérénice Batut
Climate Modeling with Conda and Containers to Improve Computational Resource Usage while Achieving Native Performance and Reproducibility
Iaquinta, Jean; Fouilloux, Anne; Ragan-Kelley, Benjamin
Comparison of two annotation tools - Helixer and Braker3
· 2025
Romane LIBOUBAN
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)
· 2025
Łukasz Opioła, Bartosz Walkowicz
Connecting Galaxy to a compute cluster
· 2025
Nate Coraor, Björn Grüning, Helena Rasche
Dynamic meta-scheduling in Galaxy with TPV Broker for smarter workload distribution
· 2025DOI
Srikakulam, Sanjay Kumar; Azab, Abdulrahman; De Geest, Paul; Vondrák, Tomáš; Kuntz, Mira; Luna-Valero, Sebastian; Grüning, Björn
Electronic structure calculations for muon spectroscopy<sup>*</sup>
Stephen J Blundell, Miki Bonacci, Pietro Bonfà, Roberto De Renzi, Benjamin M Huddart, Tom Lancaster, Leandro M Liborio, Ifeanyi J Onuorah, Giovanni Pizzi, Francis L Pratt, John M Wilkinson
EuroScienceGateway D2.2: Publishing workflow enriched FDOs to EOSC
· 2025DOI
Soiland-Reyes, Stian; Chadwick, Eli; Dadras, Armin; Grüning, Björn; Condurache, Catalin; Luna-Valero, Sebastian; Savchenko, Volodymyr
Exporting to Onedata remote
· 2025
Łukasz Opioła, Bartosz Walkowicz
Facilitating Reproducibility in Catalysis Research with Managed Workflows and RO‐Crates: A Galaxy Case Study
Abraham Nieva‐de‐la‐Hidalga, Leandro Liborio, Patrick Austin, Subindev Devadasan, Tom Underwood, Alexander Belozerov, Martin Wilding, Nitya Ramanan, C. Richard A. Catlow
Fostering and sustaining collaborative innovation: Insights from ELIXIR Europe's life science Communities
Clare Garrard, Katharina F Heil, Maria Cristina Aspromonte, Bérénice Batut, Magda Chegkazi, John M Hancock, Elaine Harrison, Naveed Ishaque, Giselle Kerry, Eija Korpelainen, Jerry Lanfear, Corinne Martin, Sebastian Schaaf, Serena Scollen, Yun-Yun Tseng, Sameer Velankar, Juan Antonio Vizcaíno, Robert M Waterhouse, Egon Willighagen, Niklas Blomberg, Peter Maccallum
Genome annotation with Braker3
· 2025
Romane LIBOUBAN, Anthony Bretaudeau
Genome annotation with Helixer
· 2025
Romane LIBOUBAN, Anthony Bretaudeau
Getting started with Onedata distributed storage
· 2025
Łukasz Opioła, Bartosz Walkowicz
Hydrogen Radical Chemistry at High-Symmetry {2Fe2S} Centers Probed Using a Muonium Surrogate
Joseph A. Wright, Farhana Haque, Leandro Liborio, Stephen P. Cottrell
Importing (uploading) data from Onedata
· 2025
Łukasz Opioła, Bartosz Walkowicz
Integration of Nordugrid ARC with Galaxy and EGI IM
Maiken Pedersen, Balazs Konya, Sebastian Luna-Valero, Björn Grüning
Introduction to deep learning
· 2025
Anup Kumar, Alireza Khanteymoori
Making Earth System Modelling and Observation Workflows Reproducible and Portable Across Federated High-Performance Computer and Cloud Platforms with Conda-based Containers
· 2025DOI
Iaquinta, Jean; Fouilloux, Anne
Ocean's variables study
· 2025
Marie Josse
Onedata user-owned storage
· 2025
Łukasz Opioła, Bartosz Walkowicz
Optimized meta-scheduling in Galaxy using TPV Broker
· 2025DOI
Azab, Abdulrahman; De Geest, Paul; Srikakulam, Sanjay Kumar; Vondra, Tomáš; Kuntz, Mira; Grüning, Björn
Optimized meta-scheduling in Galaxy using TPV Broker
· 2025DOI
Azab, Abdulrahman; De Geest, Paul; Srikakulam, Sanjay Kumar; Vondra, Tomáš; Kuntz, Mira; Grüning, Björn
Practical webby FDOs With RO-Crate and FAIR Signposting
· 2025DOI
Stian Soiland-Reyes; Peter Sefton; Simone Leo; Leyla Jael Castro; Claus Weiland; Herbert Van de Sompel
Publication on the smart job scheduler implementation
· 2025DOI
Azab, Abdulrahman; Srikakulam, Sanjay Kumar; De Geest, Paul; Vondrák, Tomáš; Grüning, Björn; Kuntz, Mira; Fernandez-del-Castillo, Enol; Luna-Valero, Sebastian
Refining Genome Annotations with Apollo (eukaryotes)
· 2025
Anthony Bretaudeau
Running Jobs on Remote Resources with Pulsar
· 2025
Nate Coraor, Simon Gladman, Marius van den Beek, Helena Rasche, Gianmauro Cuccuru, Mira Kuntz
Setting up a dev Onedata instance
· 2025
Łukasz Opioła
Single-cell ATAC-seq standard processing with SnapATAC2
· 2025
Timon Schlegel
Unlocking the Potential of Containers in Scientific Computing to Achieve Bitwise Reproducibility, Portability and Performance
Jean Iaquinta, Anne Fouilloux
Use Apptainer containers for running Galaxy jobs
· 2025
Torfinn Nome, Marius van den Beek, Matthias Bernt, Helena Rasche, Mira Kuntz
Using text-mining to measure the scientific impact and legacy of ELIXIR, a distributed research infrastructure for life science data
Francesca De Leo, Erika Balsyte, Robert Petryszak, Marilena D’Ambrosio, Chiara Bruno, Martin Cook, Ivan Mičetić, Corinne S. Martin
WorkflowHub: a registry for computational workflows
Ove Johan Ragnar Gustafsson; Sean R. Wilkinson; Finn Bacall; Stian Soiland-Reyes; Simone Leo; Luca Pireddu; Stuart Owen; Nick Juty; José M. Fernández; Tom Brown; Hervé Ménager; Björn Grüning; Salvador Capella-Gutierrez; Frederik Coppens; Carole Goble
Bring Your Own Infrastructure
· 2024DOI
Pedersen, Maiken; Srikakulam, Sanjay Kumar; De Geest, Paul; Fernandez-del-Castillo, Enol; Cristofori, Andrea; Luna-Valero, Sebastian; Tangaro, Marco Antonio; Nicotri, Stefano
Building a Distributed Computing Network for Galaxy, Application to Genome Annotation
· 2024
Eva Mercier, Romane Libouban, Thomas Chaussepied, Anthony Bretaudeau.
Create a subdomain for your community on UseGalaxy.eu
· 2024
Marie Josse
Creating high resolution images of Galaxy Workflows
· 2024
Laila Los
D3.1 Operations documentation on the Open Infrastructure deployment
· 2024DOI
Nicotri, Stefano; Tangaro, Marco Antonio; Zambelli, Federico; Ruda, Miroslav; Krenek, Ales; Grüning, Björn; Srikakulam, Sanjay Kumar; Bretaudeau, Anthony; Batalden, Sondre; Chavero Díez, María; De Geest, Paul
DIMet: an open-source tool for differential analysis of targeted isotope-labeled metabolomics data
Johanna Galvis, Joris Guyon, Benjamin Dartigues, Helge Hecht, Björn Grüning, Florian Specque, Hayssam Soueidan, Slim Karkar, Thomas Daubon, Macha Nikolski
Dynamic configuration and data security for bioinformatics cloud services with the Laniakea Dashboard
Marco Antonio Tangaro; Marica Antonacci; Giacinto Donvito; Nadina Foggetti; Pietro Mandreoli; Daniele Colombo; Graziano Pesole; Federico Zambelli
EuroScienceGateway D2.1: Reproducible FAIR Digital Objects for Workflows
Soiland-Reyes , S , Chadwick , E , Bacall , F , Fernández , J M , Grüning , B & Bayındır , H 2024 , EuroScienceGateway D2.1: Reproducible FAIR Digital Objects for Workflows . Zenodo . https://doi.org/10.5281/zenodo.13225792· 2024DOI
Soiland-Reyes, Stian; Chadwick, Eli; Bacall, Finn; Fernández, José M.; Grüning, Björn; Bayındır, Hakan
EuroScienceGateway D2.1: Reproducible FAIR Digital Objects for Workflows
· 2024DOI
Soiland-Reyes, Stian; Chadwick, Eli; Bacall, Finn; Fernández, José M.; Grüning, Björn; Bayındır, Hakan
EuroScienceGateway MS3: Initial EuroScienceGateway workflows registered
· 2024DOI
Soiland-Reyes, Stian; Grüning, Björn; De Geest, Paul
Evaluating FAIR Digital Object and Linked Data as distributed object systems
Stian Soiland-Reyes; Carole Goble; Paul Groth
Finding the muon stopping site with pymuon-suite in Galaxy
· 2024
Leandro Liborio, Eli Chadwick, Patrick Austin
From NDVI data with OpenEO to time series visualisation with Holoviews
· 2024
Marie Josse
Galaxy France: an example of a national UseGalaxy server
· 2024DOI
Siguret, Clea, Thomas Chaussepied, Romane Libouban, Eva Mercier, Julien Seiler, Bérénice Batut, Gildas Le Corguillé, and Anthony Bretaudeau
Getting your hands-on earth data
· 2024
Marie Josse
Implementation of a reproducible pipeline for producing seasonal Arctic sea ice forecasts
· 2024DOI
Vanessa Stöckl, Björn Grüning, Anne Fouilloux, Jean Iaquinta, Alejandro Coca-Castro
Make your tools available on your subdomain
· 2024
Marie Josse
Marine Omics identifying biosynthetic gene clusters
· 2024
Marie Josse
Misconceptions about Galaxy debunked by the (French) Galaxy Community
JOBIM 2024 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2024, TOULOUSE, France. pp.1-28.· 2024
Romane Libouban, Eva Mercier, Thomas Chaussepied, Bérénice Batut, Anthony Bretaudeau, Gildas Le Corguillé
Recording provenance of workflow runs with RO-Crate
Simone Leo, Michael R. Crusoe, Laura Rodríguez-Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, José M. Fernández, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutierrez, Renske de Wit, Bruno P. Kinoshita, Stian Soiland-Reyes
Sentinel 5P data visualisation
· 2024
Marie Josse
The Galaxy Platform and its Applications to Materials Science
Leandro Liborio; Alejandra Gonzalez-Beltran; Patrick Austin; Eli Chadwick
The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update
Linelle Ann L Abueg; Enis Afgan; Olivier Allart; Ahmed H Awan; Wendi A Bacon; Dannon Baker; Madeline Bassetti; Bérénice Batut; Matthias Bernt; Daniel Blankenberg; Aureliano Bombarely; Anthony Bretaudeau; Catherine J Bromhead; Melissa L Burke; Patrick K Capon; Martin Čech; María Chavero-Díez; John M Chilton; Tyler J Collins; Frederik Coppens; Nate Coraor; Gianmauro Cuccuru; Fabio Cumbo; John Davis; Paul F De Geest; Willem de Koning; Martin Demko; Assunta DeSanto; José Manuel Domínguez Begines; Maria A Doyle; Bert Droesbeke; Anika Erxleben-Eggenhofer; Melanie C Föll; Giulio Formenti; Anne Fouilloux; Rendani Gangazhe; Tanguy Genthon; Jeremy Goecks; Alejandra N Gonzalez Beltran; Nuwan A Goonasekera; Nadia Goué; Timothy J Griffin; Björn A Grüning; Aysam Guerler; Sveinung Gundersen; Ove Johan Ragnar Gustafsson; Christina Hall; Thomas W Harrop; Helge Hecht; Alireza Heidari; Tillman Heisner; Florian Heyl; Saskia Hiltemann; Hans-Rudolf Hotz; Cameron J Hyde; Pratik D Jagtap; Julia Jakiela; James E Johnson; Jayadev Joshi; Marie Jossé; Khaled Jum’ah; Matúš Kalaš; Katarzyna Kamieniecka; Tunc Kayikcioglu; Markus Konkol; Leonid Kostrykin; Natalie Kucher; Anup Kumar; Mira Kuntz; Delphine Lariviere; Ross Lazarus; Yvan Le Bras; Gildas Le Corguillé; Justin Lee; Simone Leo; Leandro Liborio; Romane Libouban; David López Tabernero; Lucille Lopez-Delisle; Laila S Los; Alexandru Mahmoud; Igor Makunin; Pierre Marin; Subina Mehta; Winnie Mok; Pablo A Moreno; François Morier-Genoud; Stephen Mosher; Teresa Müller; Engy Nasr; Anton Nekrutenko; Tiffanie M Nelson; Asime J Oba; Alexander Ostrovsky; Polina V Polunina; Krzysztof Poterlowicz; Elliott J Price; Gareth R Price; Helena Rasche; Bryan Raubenolt; Coline Royaux; Luke Sargent; Michelle T Savage; Volodymyr Savchenko; Denys Savchenko; Michael C Schatz; Pauline Seguineau; Beatriz Serrano-Solano; Nicola Soranzo; Sanjay Kumar Srikakulam; Keith Suderman; Anna E Syme; Marco Antonio Tangaro; Jonathan A Tedds; Mehmet Tekman; Wai Cheng (Mike) Thang; Anil S Thanki; Michael Uhl; Marius van den Beek; Deepti Varshney; Jenn Vessio; Pavankumar Videm; Greg Von Kuster; Gregory R Watson; Natalie Whitaker-Allen; Uwe Winter; Martin Wolstencroft; Federico Zambelli; Paul Zierep; Rand Zoabi
The Galaxy platform: Applications to catalysis workflows
· 2024DOI
Liborio L, Devadasan S, Austin P and Nieva de la Hidalga A.
WorkflowHub Knowledge Graph
· 2024DOI
Hambley, A., Chadwick, E., Woolland, O., Soiland-Reyes, S., & Savchenko, V.
An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy
Anup Kumar, Gianmauro Cuccuru, Björn Grüning, Rolf Backofen
Best practices for workflows in GitHub repositories
· 2023
Simone Leo, Eli Chadwick
BioHackEU22 Report: Enhancing Research Data Management in Galaxy and Data Stewardship Wizard by utilising RO-Crates
Ignacio Eguinoa, Marek Suchánek, Vojtěch Knaisl, Jan Slifka, Paul De Geest, David López, Björn Grüning, Simone Leo, Stian Soiland-Reyes
Computing Simulations for Large Scale Experiments: the Case of Muons
· 2023DOI
Liborio, Leandro; Austin, Patrick; Beltran, Alejandra Gonzalez; Davies, Joel
Conda, Container and Bots
Zierep, Paul; Srikakulam, Sanjay Kumar; Schaaf, Sebastian; Grüning, Björn
Customizing the look of Galaxy
· 2023
Laila Los
Der europäische Galaxy-Server demokratisiert die Analyse biowissenschaftlicher Daten
Erxleben-Eggenhofer, Anika
Enabling an operational, open and FAIR EOSC ecosystem
· 2023DOI
Sebastian Schaaf,Anika Erxleben-Eggenhofer, Björn Grüning, The EuroScienceGateway Project
EuroScienceGateway Data Management Plan (DMP; D1.1)
· 2023DOI
Erxleben, Anika; Schaaf, Sebastian; D'Anna, Flora; Gruening, Bjoern; Coppens, Frederik
EuroscienceGateway Dissemination & Exploitation plan (D&E; D1.2)
· 2023DOI
Erxleben, Anika; Schaaf, Sebastian; Marchis, Oana; Gruening, Bjoern
EuroScienceGateway: robust, scalable, and integrated open infrastructure for data-driven research within EOSC
SKAO· 2023
Volodymyr Savchenko
Exporting Workflow Run RO-Crates from Galaxy
· 2023
Paul De Geest
Finding workflows in the Galaxy universe: integrating a global ecosystem using workflow registries
Gustafsson, Ove Johan Ragnar; Soranzo, Nicola; Gruening, Bjoern; van den Beek, Marius; Bacall, Finn; Goble, Carole; Zaib Khan, Farah; Price, Gareth; Ward, Nigel; Christiansen, Jeff
Galaxy and RDM
Vol. 1 (2023): 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities· 2023DOI
Sebastian Schaaf, Anika Erxleben-Eggenhofer, Bjoern Gruening
Galaxy and Scientific Communities: How to Incorporate New Ones, Uplift Engaged Ones and Maintain Mature Ones
L. Liborio; P. Austin; A. Gonzalez-Beltran; E. Chadwick; V. Savchenko; A. Neronov; J. Iaquinta; A. Bretaudeau
Galaxy and Scientific Communities: How to Incorporate New Ones, Uplift Engaged Ones and Maintain Mature Ones
Liborio, L.; P. Austin; A. Gonzalez-Beltran; E. Chadwick; V. Savchenko; A. Neronov; J. Iaquinta; A. Bretaudeau
Genome annotation with Funannotate
· 2023
Anthony Bretaudeau
Interactive Tools (IT) in Galaxy
· 2023DOI
Kayikcioglu, Tunc; Srikakulam, Sanjay Kumar; Maier, Wolfgang; Grüning, Björn
Making workflow provenance FAIR across workflow systems with Workflow Run RO-Crate
· 2023DOI
Leo, Simone; Rodríguez-Navas, Laura; Fernández, José M.; De Geest, Paul; Pireddu, Luca; Crusoe, Michael R.; Garijo, Daniel; Colonnelli, Iacopo; Sirvent, Raül; Soiland-Reyes, Stian
MuonGalaxy - tools, workflows and more for muons and materials science
Austin, Patrick; Davies, Joel; Gonzalez-Beltran, Alejandra; Liborio, Leandro
Obis marine indicators
· 2023
Marie Josse, Yvan Le Bras
Ocean Data View (ODV)
· 2023
Marie Josse
RO-Crate - Introduction
· 2023
Stian Soiland-Reyes, Peter Sefton
RO-Crate in Python
· 2023
Simone Leo, Bruno P. Kinoshita
Setting up Celery Workers for Galaxy
· 2023
Mira Kuntz
Sharing data as machine-actionable objects using RO-Crate, Bioschemas and Signposting
· 2023DOI
Stian Soiland-Reyes; Simone Leo; Leyla Jael Castro; Peter Sefton; Carole Goble
The Galaxy Platform and its Applications to Materials Science
· 2023DOI
Liborio, Leandro; Gonzalez-Beltran, Alejandra; Austin, Patrick; Chadwick, Eli
Using FAIR and Open Science practices to better understand vegetation browning in Troms and Finnmark (Norway)
Jean Iaquinta, Anne Fouilloux
Creating lightweight FAIR Digital Objects with RO-Crate and FAIR Signposting
· 2022DOI
Soiland-Reyes, Stian; Sefton, Peter; Castro, Leyla Jael; Coppens, Frederik; Garijo, Daniel; Leo, Simone; Portier, Marc; Groth, Paul; Goble, Carole
Enhancing RDM in Galaxy by integrating RO-Crate
Paul De Geest; Frederik Coppens; Stian Soiland-Reyes; Ignacio Eguinoa; Simone Leo
Functional annotation of protein sequences
· 2022
Anthony Bretaudeau
Improving Galaxy provenance export using RO-Crate
· 2022DOI
De Geest, Paul; Coppens, Frederik; Eguinoa, Ignacio; Soiland-Reyes, Stian; Leo, Simone
Making EOSC Research Objects FAIR with RO-Crate: A common metadata overlay for EOSC repositories
Justin Clark-Casey; Stian Soiland-Reyes
Making EOSC Research Objects FAIR with RO-Crate: A common metadata overlay for EOSC repositories
EOSC Symposium 2022 , Prague, CZ, 2022-11-14/--17 (Session FAIR enabling practices, Part A)· 2022DOI
Clark-Casey, Justin; Soiland-Reyes, Stian
Reproducible Cross-border High Performance Computing for Scientific Portals
Kessy Abarenkov, Anne Fouilloux, Helmut Neukirchen, Abdulrahman Azab
RO-Crate: packaging metadata love notes into FAIR Digital Objects
Carole Goble, Stian Soiland-Reyes
Updating Linked Data practices for FAIR Digital Object principles
Stian Soiland-Reyes, Leyla Jael Castro, Daniel Garijo, Marc Portier, Carole Goble, Paul Groth
WorkflowHub: FAIR Workflow Registry
· 2022DOI
Justin Clark-Casey, Carole Goble, Finn Bacall, Frederik Coppens, & WorkflowHub Club
Masking repeats with RepeatMasker
· 2021
Anthony Bretaudeau, Alexandre Cormier, Laura Leroi, Erwan Corre, Stéphanie Robin, Jonathan Kreplak
Refining Genome Annotations with Apollo (prokaryotes)
· 2021
Anthony Bretaudeau, Helena Rasche, Nathan Dunn, Mateo Boudet
Galaxy Interactive Tools
· 2020
Nate Coraor, Simon Gladman, Helena Rasche, Anthony Bretaudeau, José Manuel Domínguez
Galaxy Installation with Ansible
· 2019
Helena Rasche, Nate Coraor, Simon Gladman
Galaxy Database schema
· 2016
Hans-Rudolf Hotz, Björn Grüning
Genome Annotation
· 2015
Anika Erxleben, Björn Grüning
Genome Annotation tooling in Galaxy: contributions of the EuroScienceGateway project
Romane Libouban, Anthony Bretaudeau
▶Deliverables (11)
Demonstrators, pilots, prototypes
Documents, reports
Documents, reports
Documents, reports
Documents, reports
Documents, reports
Documents, reports
Documents, reports
Documents, reports
Documents, reports