Biodiversity Genomics Europe

HORIZON.2.6HORIZON-RIAID: 101059492
EC Contribution
€170,807
Consortium Size
37 orgs
Summary

The Biodiversity Genomics Europe (BGE) ProjectThe Biodiversity Genomics Europe (BGE) Project has the overriding aim of accelerating the application of genomic science to enhance understanding of biodiversity, monitor biodiversity change, and guide interventions to address its decline. BGE coordinates and upscales DNA barcoding and reference genome generation in the context of European biodiversity. The Project develops synergies by aligning efforts and resources of the DNA barcoding and genome sequencing communities across the continent. The BGE objectives with derived ambitions: CAPACITY: To establish functioning biodiversity genomics networks at the European level to connect and grow community capacity to use genomic tools to help tackle the biodiversity crisisWith the ambition to (a) Future-proof our networks on biodiversity genomics research, (b) lower access thresholds to biodiversity genomics research, and (c) promote co-creation and citizen engagement.PRODUCTION - To establish and implement large-scale biodiversity genomic data-generating pipelines for Europe to accelerate the production and accessibility of genomic data for biodiversity characterisation, conservation and biomonitoringWith the ambition to (a) establish distributed and inclusive capacity, (b) build economies of scale and (c) connect previously disjoined resources to deliver relevant knowledge. APPLICATION - To apply genomic tools to enhance understanding of pan-European biodiversity and biodiversity declines to improve the efficacy of management interventions and biomonitoring programmes. With the ambition to (a) improve the use of biodiversity genomics data in science policy and (b) establish European-wide large scale biodiversity genomics research mechanisms.The BGE Consortium is comprised of 33 partners across 20 countries and brings together, for the first time at this scale, the two communities for barcoding and reference genome to implement its aspirational programme.

Consortium (37)

🇳🇱 STICHTING NATURALIS BIODIVERSITY CENTERNL
coordinator
AGENCIA ESTATAL CONSEJO SUPERIOR DE INVESTIGACIONES CIENTIFICAS
partner
🇩🇪 ALBERT-LUDWIGS-UNIVERSITAET FREIBURGDE
partner
🇬🇷 ARISTOTELIO PANEPISTIMIO THESSALONIKISGR
partner
🇵🇹 ASSOCIACAO BIOPOLISPT
partner
🇫🇷 COMMISSARIAT A L ENERGIE ATOMIQUE ET AUX ENERGIES ALTERNATIVESFR
partner
🇪🇸 CONSORCIO PARA LA EXPLOTACION DEL CENTRO NACIONAL DE ANALISIS GENOMICOES
partner
🇧🇪 CONSORTIUM OF EUROPEAN TAXONOMIC FACILITIESBE
partner
🇬🇧 EARLHAM INSTITUTEGB
partner
🇩🇪 EUROPEAN MOLECULAR BIOLOGY LABORATORYDE
partner
🇭🇷 FACULTY OF SCIENCE UNIVERSITY OF ZAGREBHR
partner
🇩🇪 FORSCHUNGSVERBUND BERLIN EVDE
partner
🇪🇸 FUNDACIO CENTRE DE REGULACIO GENOMICAES
partner
🇩🇪 GENERALDIREKTION DER STAATLICHE NATURWISSENSCHAFTLICHEN SAMMLUNGEN BAYERNSDE
partner
🇬🇧 GENOME RESEARCH LIMITED LBGGB
partner
🇬🇷 HELLENIC CENTRE FOR MARINE RESEARCHGR
partner
🇨🇦 International Barcode of Life ConsortiumCA
partner
🇫🇮 JYVASKYLAN YLIOPISTOFI
partner
🇩🇪 LEIBNIZ-INSTITUT ZUR ANALYSE DES BIODIVERSITATSWANDELSDE
partner
🇭🇺 MAGYAR TERMESZETTUDOMANYI MUZEUMHU
partner
🇬🇧 NATURAL HISTORY MUSEUMGB
partner
🇳🇴 NORGES TEKNISK-NATURVITENSKAPELIGE UNIVERSITET NTNUNO
partner
🇬🇷 PANEPISTIMIO KRITISGR
partner
🇬🇧 ROYAL BOTANIC GARDEN EDINBURGHGB
partner
🇨🇭 SIB SWISS INSTITUTE OF BIOINFORMATICSCH
partner
🇪🇪 TARTU ULIKOOLEE
partner
🇺🇸 THE ROCKEFELLER UNIVERSITY NOT FOR PROFIT CORPORATIONUS
partner
🇺🇸 The University of California, Davis, Genome CenterUS
partner
🇬🇧 THE UNIVERSITY OF MANCHESTERGB
partner
🇮🇹 UNIVERSITA DEGLI STUDI DI BARI ALDO MOROIT
partner
🇮🇹 UNIVERSITA DEGLI STUDI DI FIRENZEIT
partner
🇨🇭 UNIVERSITE DE LAUSANNECH
partner
🇳🇴 UNIVERSITETET I OSLONO
partner
🇸🇮 UNIVERZA NA PRIMORSKEM UNIVERSITA DEL LITORALESI
partner
🇵🇱 UNIWERSYTET LODZKIPL
partner
🇸🇪 UPPSALA UNIVERSITETSE
partner
🇺🇦 V. N. KARAZIN KHARKIV NATIONAL UNIVERSITYUA
partner

Project Results (81)

Source: CORDIS, the EU research results database.

Publications (66)
Biodiversity Genomics Europe (BGE) Project – Abridged Grant Proposal
Research Ideas and Outcomes· 2026DOI
Dimitris Koureas, Pedro Beja, Mark Blaxter, Astrid Böhne, Sarah Bourlat, Torbjørn Ekrem, Brent Emerson, Katharina Heil, José Melo-Ferreira, Ben Price, Rutger Vos, Wouter Addink, Tyler Alioto, Filippos Aravanopoulos, Jonas Astrin, Jean-Marc Aury, Ian Barnes, Claudia Bruschini, Elena Buzan, Guy Cochrane, Tamás Cserkész, Thanos Dailianis, Elza Duijm, Glenn Dunshea, Rosa Fernández, Sónia Ferreira, Giulio Formenti, Sara Fratini, Konstantinos Gkagkavouzis, Carole Goble, Michal Grabowski, Bjorn Grüning, Ivo Gut, Marta Gut, Peter Harrison, Axel Hausmann, Jacob Höglund, Laura Iacolina, Alessio Iannucci, Kjetill Jakobsen, Urmas Kõljalg, Henrik Lantz, Harris Lewin, Jan Macher, Tereza Manousaki, Fergal Martin, Ximo Mengual, Pedro Oliveira, Rebekah Oomen, Michael Raupach, Ana Riesgo, Hugues Roest Crollius, Anna Somogyi, Torsten Struck, Hannes Svardal, Ave Tooming-Klunderud, Alexandros Triantafyllidis, Olga Vinnere Pettersson, Maximilian Wagner, Patrick Wincker, Ni Yan, Jose Alonso, Ana Casino, Claudio Ciofi, Gabriela Daňková, Peter Hollingsworth, Mara Lawniczak, Camila Mazzoni, Robert Waterhouse
ERGA-BGE genome of Albinaria teres (Olivier, 1801): a rock-dwelling land snail endemic to the island of Crete, Greece
Open Research Europe· 2026DOI
Danae Karakasi; Katerina Vardinoyannis; Giannis Bolanakis; Eleftherios Bitzilekis; Manos Stratakis; Petros Lymberakis; Nikolaos Poulakakis; Rita Monteiro; Astrid Böhne; Rosa Fernández; Nuria Escudero; Alice Moussy; Corinne Cruaud; Karine Labadie; Lola Demirdjian; Adama N’dar; Francesca Floriana Tricomi; Leanne Haggerty; Fergal Martin; Patrick Wincker; Pedro H Oliveira; Jean-Marc Aury; Tom Brown
ERGA-BGE genome of Erebia palarica Chapman, 1905: a montane butterfly endemic to North-West Spain
Open Research Europe· 2026DOI
Marta Vila Taboada; Laura Torrado-Blanco; Nils Ryrholm; David Romero-Pedreira; María Conejero; Astrid Böhne; Rita Monteiro; Thomas Marcussen; Rebekah A. Oomen; Torsten H. Struck; Laura Aguilera; Marta Gut; Francisco Câmara Ferreira; Fernando Cruz; Jèssica Gómez-Garrido; Tyler S. Alioto; Leanne Haggerty; Fergal Martin; Chiara Bortoluzzi
ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea
Open Research Europe· 2026DOI
Katerina Vasileiadou, Tereza Manousaki, Astrid Böhne, Rosa Fernández, Nuria Escudero, null null, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Benjamin Istace, Arnaud Couloux, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Rita Monteiro
ERGA-BGE reference genome of the Azores Bullfinch - Pyrrhula murina Godman, 1866: an IUCN Vulnerable Species endemic to a single island in the Azores Archipelago (Portugal)
Open Research Europe· 2026DOI
Ricardo Jorge Lopes, Astrid Böhne, Thomas Marcussen, Rebekah A. Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Rita Monteiro
ERGA-BGE reference genome of Xylophaga dorsalis - a common deep-sea wood-boring bivalve with Atlantic-Mediterranean distribution
Open Research Europe· 2026DOI
Sergi Taboada; Carlota Gracia-Sancha; Carles Galià-Camps; Astrid Böhne; Rita Monteiro; Thomas Marcussen; Rebekah A. Oomen; Torsten H. Struck; Marta Gut; Laura Aguilera; Francisco Câmara Ferreira; Fernando Cruz; Jèssica Gómez-Garrido; Tyler S. Alioto; Fergal Martin; Anna Lazar; Leanne Haggerty; Chiara Bortoluzzi
Molecular Ecology Resources
Molecular Ecology Resources· 2026DOI
Katja Reichel; Jaakko Pohjoismäki; Jonas J. Astrin; Astrid Böhne; Chiara Bortoluzzi; Elena Bužan; Javier del Campo; Claudio Ciofi; Camilla B. Di‐Nizo; Pradeep K. Divakar; Carola Greve; Vladimír Hampl; Leon Hilgers; Veronika N. Laine; Jennifer A. Leonard; Jesus Lozano‐Fernandez; Lada Lukić Bilela; Camila J. Mazzoni; Ann M. McCartney; José Melo‐Ferreira; Rita Monteiro; Rebekah A. Oomen; Martina Pavlek; João Pimenta; Michal Rindos; Ole Seehausen; Andrii Tarieiev; Salvatore Tomasello; Olga Vinnere Pettersson; Robert M. Waterhouse; Alexandra A.‐T. Weber; Oleksandr Zinenko; Christian de Guttry
Molecular phylogeny reveals a new species of the Hygrobates longipalpis complex from Portugal (Acariformes, Hydrachnidia, Hygrobatidae)
Ecologica Montenegrina· 2026DOI
Vladimir Pešić, Ekaterina S. Konopleva, Dinis Girão, Chiara Vergata, Luis Guilherme Sousa, Sónia Ferreira
A new species of Torrenticola ungeri complex (Acari, Hydrachnidia, Torrenticolidae), and new water mite records for Portugal
Zootaxa· 2025DOI
Pešić, Vladimir; Girão, Dinis; Vergata, Chiara; da Silva, Luis P.; Ferreira, Sonia
Checklist of water mites from the Balkan Peninsula: second supplement, new DNA barcodes and description of a new species
Zootaxa· 2025DOI
VLADIMIR PEŠIĆ, ALEKSANDRA BANKOWSKA, TOM GOLDSCHMIDT, KARSTEIN HÅRSAKER, MILICA JOVANOVIĆ, ELISAVET KAITETZIDOU, MAJA KRAKOWIAK, ALEKSANDRA KOZŁOWSKA, EVANGELIA MICHALOUDI, GRZEGORZ MICHOŃSKI, MARKO MILIŠA, IVANA POZOJEVIĆ, TOMASZ REWICZ, OLIWIA RUSINIAK, KAROLINA SOBOLAK, IZABELA SZUĆKO, ROBERT STRYJECKI, ELISABETH STUR, AGNIESZKA SZLAUER-ŁUKASZEWSKA, MAGDALENA SZENEJKO, ANDRZEJ ZAWAL
Delimiting Species—Prospects and Challenges for <scp>DNA</scp> Barcoding
Molecular Ecology· 2025DOI
Brent C. Emerson
Ensembl 2025
Nucleic Acids Research· 2025DOI
Sarah C Dyer, Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes, Vianey Paola Barrera-Enriquez, Arne Becker, Ruth Bennett, Martin Beracochea, Andrew Berry, Jyothish Bhai, Simarpreet Kaur Bhurji, Sanjay Boddu, Paulo R Branco Lins, Lucy Brooks, Shashank Budhanuru Ramaraju, Lahcen I Campbell, Manuel Carbajo Martinez, Mehrnaz Charkhchi, Lucas A Cortes, Claire Davidson, Sukanya Denni, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Oluwadamilare Falola, Reham Fatima, Thiago Genez, Jose Gonzalez Martinez, Tatiana Gurbich, Matthew Hardy, Zoe Hollis, Toby Hunt, Mike Kay, Vinay Kaykala, Diana Lemos, Disha Lodha, Nourhen Mathlouthi, Gabriela Alejandra Merino, Ryan Merritt, Louisse Paola Mirabueno, Aleena Mushtaq, Syed Nakib Hossain, José G Pérez-Silva, Malcolm Perry, Ivana Piližota, Daniel Poppleton, Irina Prosovetskaia, Shriya Raj, Ahamed Imran Abdul Salam, Shradha Saraf, Nuno Saraiva-Agostinho, Swati Sinha, Botond Sipos, Vasily Sitnik, Emily Steed, Marie-Marthe Suner, Likhitha Surapaneni, Kyösti Sutinen, Francesca Floriana Tricomi, Ian Tsang, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Natalie L Willhoft, Jamie Allen, Jorge Alvarez-Jarreta, Marc Chakiachvili, Jitender Cheema, Jorge Batista da Rocha, Nishadi H De Silva, Stefano Giorgetti, Leanne Haggerty, Garth R Ilsley, Jon Keatley, Jane E Loveland, Benjamin Moore, Jonathan M Mudge, Guy Naamati, John Tate, Stephen J Trevanion, Andrea Winterbottom, Bethany Flint, Adam Frankish, Sarah E Hunt, Robert D Finn, Mallory A Freeberg, Peter W Harrison, Fergal J Martin, Andrew D Yates
ERGA-BGE genome of Acomys minous (Bate, 1906): the Crete spiny mouse, endemic to the island of Crete, Greece
· 2025DOI
Petros Lymberakis, Danae Karakasi, Manolis Papadimitrakis, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Jean-Marc Aury, Alice Moussy, Corinne Cruaud, Karine Labadie, Sophie Mangenot, Caroline Belser, Lola Demirdjian, Swati Sinha, Leanne Haggerty, Fergal Martin, Patrick Wincker, Pedro H. Oliveira, Tom Brown
ERGA-BGE genome of Androsace saussurei Dentant, Lavergne, F. C. Boucher & S. Ibanez, a recently described plant from the rooftops of Europe
Open Research Europe· 2025DOI
Sébastien Lavergne; Zoé Rosa; Chuan Peng; Rita Monteiro; Astrid Böhne; Thomas Marcussen; Torsten H. Struck; Rebekah A Oomen; Alice Moussy; Corinne Cruaud; Karine Labadie; Emilie Téodori; Lola Demirdjian; Patrick Wincker; Pedro H Oliveira; Jean-Marc Aury; Vianey Paola Barrera Enriquez; Leanne Haggerty; Fergal Martin; Tom Brown
ERGA-BGE genome of Cheirolophus tagananensis: an IUCN endangered shrub endemic to the Canary Islands
· 2025DOI
Jaume Pellicer, Teresa Garnatje, Daniel Vitales, Oriane Hidalgo, Joan Valles, Alfredo Garcia-Fernandez, Arnoldo Santos-Guerra, Astrid Bohne, Rita Monteiro, Rosa Fernandez, Nuria Escudero, null null, null null, null null, Abitha Thomas, Benjamin Jackson, Jonathan MD Wood, Kerstin Howe, Mark Blaxter, Shane McCarthy, Chiara Bortoluzzi
ERGA-BGE genome of Dailognatha quadricollis, an East Mediterranean darkling beetle
Open Research Europe· 2025DOI
Giannis Bolanakis; Danae Karakasi; Eleftherios Bitzilekis; Manos Stratakis; Apostolos Trichas; Petros Lymberakis; Nikos Poulakakis; Astrid Böhne; Rita Monteiro; Rosa Fernández; Nuria Escudero; Alice Moussy; Corinne Cruaud; Karine Labadie; Lola Demirdjian; Emilie Téodori; Patrick Wincker; Pedro H. Oliveira; Jean-Marc Aury; Chiara Bortoluzzi
ERGA-BGE genome of Dendarus foraminosus: an IUCN Least Concern darkling beetle endemic to Crete (Greece)
Open Research Europe· 2025DOI
Bolanakis, Giannis; Karakasi, Danae; Trichas, Apostolos; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Bitzilekis, Eleftherios; Stratakis, Manos; Lymberakis, Petros; Poulakakis, Nikolaos; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Duprat, Simone; Téodori, Emilie; Wincker, Patrick; H. Oliveira, Pedro; Aury, Jean-Marc; Haggerty, Leanne; Sinha, Swati; Martin, Fergal; Bortoluzzi, Chiara
ERGA-BGE genome of Noah`s Ark shell (Arca noae Linnaeus, 1758), a Mediterranean bivalve species
· 2025DOI
Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Simone Duprat, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
ERGA-BGE genome of Patella rustica Linnaeus, 1758: a resource to investigate responses to global warming in the intertidal
Open Research Europe· 2025DOI
Rui Faria; Rocío Nieto Vilela; Fernando P Lima; Rita Monteiro; Astrid Böhne; Thomas Marcussen; Torsten H Struck; Rebekah A Oomen; Marta Gut; Laura Aguilera; Tyler Alioto; Francisco Câmara Ferreira; Jèssica Gómez-Garrido; Fernando Cruz; Anna Lazar; Leanne Haggerty; Fergal Martin; Tom Brown
ERGA-BGE genome of Pinctada radiata (Leach, 1814): one of the first Lessepsian migrants
· 2025DOI
Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Benjamin Istace, Arnaud Couloux, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid
Open Research Europe· 2025DOI
Fernández-Álvarez, Fernando Ángel; Bernal-Bajo, Ainhoa; Escudero, Nuria; Conejero, María; Riesgo, Ana; Fernández, Rosa; Monteiro, Rita; Böhne, Astrid; Aguilera, Laura; Gut, Marta; Alioto, Tyler S; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; Haggerty, Leanne; Martin, Fergal; Brown, Tom
ERGA-BGE genome of the ironclad beetle Tarphius canariensis Wollaston, 1862
Open Research Europe· 2025DOI
Brent C Emerson; María Conejero; Ana Riesgo; Víctor Noguerales; Rita Monteiro; Astrid Böhne; Javier Palma Guerrero; Rosa Fernández; Leanne Haggerty; Fergal Martin; Tom Brown
ERGA-BGE genome of the Spanish moon moth Actias isabellae Graells, 1849: a nocturnal lepidopteran protected by the Habitats Directive
Open Research Europe· 2025DOI
Marta Vila; Neus Marí-Mena; Roger Vila; Ana Riesgo; Daniel García-Souto; Carlos Lopez-Vaamonde; Astrid Böhne; Rita Monteiro; Thomas Marcussen; Rebekah Oomen; Torsten H. Struck; Marta Gut; Laura Aguilera; Francisco Câmara Ferreira; Fernando Cruz; Jèssica Gómez-Garrido; Tyler S. Alioto; Leanne Haggerty; Fergal Martin; Chiara Bortoluzzi
ERGA-BGE genome of the Spanish Moon Moth<i>Graellsia isabellae</i>Graells, 1849: a nocturnal lepidopteran protected by the Habitats Directive
· 2025DOI
Marta Vila, Neus Marí-Mena, Roger Vila, Ana Riesgo, Daniel García-Souto, Carlos Lopez-Vaamonde, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
ERGA-BGE Genome of the viperine water snake (Natrix maura): a key species for evolutionary insights of freshwater snakes
Open Research Europe· 2025DOI
Carranza, Salvador; Fernández-Guiberteau, Daniel; Blasón, Laura; Tulloch, Sergi; Monteiro, Rita; Böhne, Astrid; Fernández, Rosa; Escudero, Nuria; Aguilera, Laura; Gut, Marta; Alioto, Tyler S; Câmara Ferreira, Francisco; Gómez-Garrido, Jèssica; Cruz, Fernando; Sinha, Swati; Haggerty, Leanne; Martin, Fergal; Brown, Tom
ERGA-BGE genome of Valencia hispanica (Valenciennes, 1826): a critically endangered Iberian toothcarp
· 2025DOI
Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Tom Brown
ERGA-BGE genome of Xanthium orientale subsp. italicum (Moretti) Greuter. A plant of American origin, now widespread and, in some cases, invasive in Europe
Open Research Europe· 2025DOI
Tomasello, Salvatore; Manzo, Eleonora; Monteiro, Rita; Böhne, Astrid; Marcussen, Thomas; Struck, Torsten; Oomen, Rebekah; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; N’dar, Adama; Wincker, Patrick; Oliveira, Pedro H.; Aury, Jean-Marc; Barrera Enriquez, Vianey Paola; Haggerty, Leanne; Martin, Fergal; Brown, Tom
ERGA-BGE genome of<i>Androsace saussurei</i>Dentant, Lavergne, F. C. Boucher & S. Ibanez, a recently described plant from the rooftops of Europe
· 2025DOI
Sébastien Lavergne, Alexy Rosa, Chuan Peng, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten Struck, Rebekah A. Oomen, null null, Alice Moussy, Corinne Cruaud, Karine Labadie, Emilie Téodori, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Tom Brown
ERGA-BGE genome of<i>Coenonympha oedippus</i>: an IUCN endangered European butterfly species occurring in two ecotypes
· 2025DOI
Tatjana Čelik, Tjaša Lokovšek, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
ERGA-BGE genome of<i>Erebia palarica</i>Chapman, 1905: a montane butterfly endemic to North-West Iberia
· 2025DOI
Marta Vila, Laura Torrado-Blanco, Nils Ryrholm, David Romero-Pedreira, María Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
ERGA-BGE genome of<i>Stigmatoteuthis arcturi</i>Robson, 1948: the jewelled squid
· 2025DOI
Fernando Ángel Fernández-Álvarez, Ainhoa Bernal-Bajo, Nuria Escudero, María Conejero, Ana Riesgo, Rosa Fernández, Rita Monteiro, Astrid Böhne, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tom Brown
ERGA-BGE reference genome of Eunicella cavolini, an IUCN Near Threatened Gorgonian of the Mediterranean Sea
Open Research Europe· 2025DOI
Aurelle, Didier; Guillemain, Dorian; Zuberer, Frédéric; Malengros, Denys; Böhne, Astrid; Monteiro, Rita; Marcussen, Thomas; Struck, Torsten H.; A. Oomen, Rebekah; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Belser, Caroline; Wincker, Patrick; H. Oliveira, Pedro; Aury, Jean-Marc; Bortoluzzi, Chiara
ERGA-BGE reference genome of Hanak's bat (Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes
Open Research Europe· 2025DOI
Georgakakis, Panagiotis; Karakasi, Danae; Lymberakis, Petros; Papadimitrakis, Manolis; Stratakis, Manos; Bitzilekis, Eleftherios; Poulakakis, Nikolaos; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Mangenot, Sophie; Belser, Caroline; Wincker, Patrick; Oliveira, Pedro H.; Aury, Jean-Marc; Haggerty, Leanne; Sinha, Swati; Martin, Fergal; Bortoluzzi, Chiara
ERGA-BGE reference genome of Holothuria (Platyperona) sanctori: a sea cucumber from the Mediterranean Sea
Open Research Europe· 2025DOI
Vasileiadou, Katerina; Dailianis, Thanos; Skouradakis, Grigorios; Vernadou, Emmanouela; Karakasi, Danae; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Manousaki, Tereza; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Ndar, Adama; Wincker, Patrick; H Oliveira, Pedro; Aury, Jean-Marc; Bortoluzzi, Chiara
ERGA-BGE reference genome of Leviellus thorelli, a common orb-weaving spider representing the Zygiellidae family
Open Research Europe· 2025DOI
Gregorič, Matjaz; Bužan, Elena; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Gut, Marta; Aguilera, Laura; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; S. Alioto, Tyler; Bortoluzzi, Chiara
ERGA-BGE reference genome of Lewinskya acuminata, a common epiphytic Mediterranean moss with disjunct populations in California and Ethiopia
Open Research Europe· 2025DOI
Pablo Aguado-Ramsay; Francisco Lara; Isabel Draper; Maria Conejero; Astrid Böhne; Rita Monteiro; Thomas Marcussen; Torsten H. Struck; Rebekah A. Oomen; Alice Moussy; Corinne Cruaud; Karine Labadie; Lola Demirdjian; Emilie Téodori; Patrick Wincker; Pedro H. Oliveira; Jean-Marc Aury; Chiara Bortoluzzi
ERGA-BGE reference genome of the lineid heteronemertean Lineus lacteus (Pilidiophora, Nemertea)
Open Research Europe· 2025DOI
Verdes, Aida; Alvarez-Campos, Patricia; Conejero, María; Riesgo, Ana; Böhne, Astrid; Monteiro, Rita; Palma-Guerrero, Javier; Fernández, Rosa; Gut, Marta; Aguilera, Laura; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; S. Alioto, Tyler; Bortoluzzi, Chiara
ERGA-BGE Reference Genome of the Striped Field Mouse (Apodemus agrarius), a Widespread and Abundant Species in Central and Eastern Europe
· 2025DOI
Franc Janžekovič, Elena Buzan, Aja Bončina, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler Alioto, Leanne Haggerty, Fergal Martin, Diego De Pan
ERGA-BGE Reference Genome of<i>Loboptera subterranea</i>: a cave adapted cockroach endemic to the Canary Islands
· 2025DOI
Heriberto López, Pedro Oromí, Xavier Belles, Guillem Ylla, Nuria Escudero, Rosa Fernández, Astrid Böhne, Marta Gut, Laura Aguilera, Tyler Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Rita Monteiro
Exploring the water mite fauna (Acari, Hydrachnidia) of the Madeira archipelago: DNA Barcoding reveals a remarkable species endemicity
Zootaxa· 2025DOI
VLADIMIR PEŠIĆ; ANDRZEJ ZAWAL; ALEKSANDRA BANKOWSKA; RICARDO ARAÚJO; ŁUKASZ SŁUGOCKI; TOMASZ REWICZ; MAJA KRAKOWIAK; GRZEGORZ MICHOŃSKI; DINIS GIRÃO; LUIS P. DA SILVA; INÊS ÓRFÃO; PEDRO M. RAPOSEIRO; LORENZO BALLINI; ROBERT STRYJECKI; TORBJØRN EKREM; SÓNIA FERREIRA
Extensive DNA Barcoding of Lepidoptera of Crete (Greece) Reveals Significant Taxonomic and Faunistic Gaps and Supports the First Comprehensive Checklist of the Island’s Fauna
Insects· 2025DOI
Peter Huemer, Kai Berggren, Leif Aarvik, Erwin Rennwald, Axel Hausmann, Andreas Segerer, Giorgia Staffoni, Aina Mærk Aspaas, Apostolos Trichas, Paul D. N. Hebert
First record of the cockroach Ectobius vittiventris (Costa, 1847) (Dictyoptera:Blattodea: Ectobiinae) from Poland and new data on its occurrence in Czechia
FRAGMENTA FAUNISTICA· 2025DOI
Przemysław Żurawlew, Robert Vlk, Anna Kapusta, Paweł Radzikowski, Michal Grabowski
Gap analysis on the implementation of reference genomes and genomics in conservation, bioeconomy and disease applications Intermediate report
· 2025DOI
Pimenta, João; Melo-Ferreira, José
Insects
Insects· 2025DOI
Peter Huemer; Kai Berggren; Leif Aarvik; Erwin Rennwald; Axel Hausmann; Andreas Segerer; Giorgia Staffoni; Aina Mærk Aspaas; Apostolos Trichas; Paul D. N. Hebert
Methods in Ecology and Evolution
Methods in Ecology and Evolution· 2025DOI
Marius Hannes Eisele; Brendan Furneaux; Tomas Roslin; Otso Ovaskainen; Brent C. Emerson; Carmelo Andújar
Molecular phylogeny reveals three new water mite species of the genus Teutonia Koenike, 1889, from Portugal (Acari, Hydrachnidia, Teutoniidae)
Systematic and Applied Acarology· 2025DOI
Vladimir Pešić, Ekaterina S. Konopleva, Alessio Iannucci, Sónia Ferreira, Elisabeth Stur
Molecular phylogeny reveals three new water mite species of the genus Teutonia Koenike, 1889, from Portugal (Acari, Hydrachnidia, Teutoniidae)
Systematic and Applied Acarology· 2025DOI
Pešić, Vladimir; Konopleva, Ekaterina; Iannucci, Alessio; Ferreira, Sonia; Stur, Elisabeth
Taxonomic position of Tetrops peterkai Skořepa, 2020 (Сoleoptera: Сerambycidae) and its cryptic distribution
Journal of Vasyl Stefanyk Precarpathian National University. Biology· 2025DOI
Andrew Zamoroka, Oleksandr Zinenko
The role of community science in DNA-based biodiversity monitoring
Molecular Ecology (in review)· 2025DOI
Corrales, C., Bacela-Spychalska, K., Buzan, E., Ekrem, T., Ferreira, S., Goodall-Copestake, W., van Ommen Kloeke, E., Hollingsworth, P., Bourlat, S. J.
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Molecular Ecology Resources· 2024DOI
Ali Hakimzadeh, Alejandro Abdala Asbun, Davide Albanese, Maria Bernard, Dominik Buchner, Benjamin Callahan, J. Gregory Caporaso, Emily Curd, Christophe Djemiel, Mikael Brandström Durling, Vasco Elbrecht, Zachary Gold, Hyun S. Gweon, Mehrdad Hajibabaei, Falk Hildebrand, Vladimir Mikryukov, Eric Normandeau, Ezgi Özkurt, Jonathan M. Palmer, Géraldine Pascal, Teresita M. Porter, Daniel Straub, Martti Vasar, Tomáš Větrovský, Haris Zafeiropoulos, Sten Anslan
Building a Portuguese coalition for biodiversity genomics
npj Biodiversity· 2024DOI
João P. Marques, Paulo C. Alves, Isabel R. Amorim, Ricardo J. Lopes, Monica Moura, Eugene Myers, Manuela Sim-sim, Carla Sousa-Santos, M. Judite Alves, Paulo A. V. Borges, Thomas Brown, Miguel Carneiro, Carlos Carrapato, Luís M. P. Ceríaco, Claúdio Ciofi, Luís P. da Silva, Genevieve Diedericks, Maria Angela Diroma, Liliana Farelo, Giulio Formenti, Fátima Gil, Miguel Grilo, Alessio Iannucci, Henrique G. Leitão, Cristina Máguas, Ann M. Mc Cartney, Sofia L. Mendes, João M. Moreno, Marco Morselli, Alice Mouton, Chiara Natali, Fernando Pereira, Rúben M. C. Rego, Roberto Resendes, Guilherme Roxo, Hannes Svardal, Helena Trindade, Sara Vicente, Sylke Winkler, Marcela Alvarenga, Andreia J. Amaral, Agostinho Antunes, Paula F. Campos, Adelino V. M. Canário, Rita Castilho, L. Filipe C. Castro, Angelica Crottini, Mónica V. Cunha, Gonçalo Espregueira Themudo, Pedro J. Esteves, Rui Faria, Carlos Rodríguez Fernandes, Jean-Baptiste Ledoux, Bruno Louro, Sara Magalhaes, Octávio S. Paulo, Gareth Pearson, João Pimenta, Francisco Pina-Martins, Teresa L. Santos, Ester Serrão, José Melo-Ferreira, Vítor C. Sousa
Contextualising samples: Supporting reference genomes of European biodiversity through sample and associated metadata collection
Contextualising samples: Supporting reference genomes of European biodiversity through sample and associated metadata collection· 2024DOI
Astrid Böhne, Rosa Fernández, Jennifer A. Leonard, Ann M. McCartney, Seanna McTaggart, José Melo-Ferreira, Rita Monteiro, Rebekah A. Oomen, Olga Vinnere Pettersson, Torsten H. Struck
DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia)
ZooKeys· 2024DOI
Vladimir Pešić, Andrzej Zawal, Sónia Ferreira, Laura Benitez-Bosco, Ana Cruz-Oliveira, Dinis Girão, Adriana Padilha, Paolo Turaccio, Samantha Rossini, Lorenzo Ballini, Giorgia Staffoni, Sara Fratini, Claudio Ciofi, Alessio Iannucci, Torbjørn Ekrem, Elisabeth Stur
ERGA-BGE genome of<i>Valencia hispanica</i>(Valenciennes, 1826): a critically endangered Iberian toothcarp
· 2024DOI
Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Thomas Brown
ERGA-BGE Reference Genome of the Northern chamois (<i>Rupicapra rupicapra</i>): Europe’s most abundant mountain ungulate
· 2024DOI
Elena Buzan, Aja Bončina, Boštjan Pokorny, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Leanne Haggerty, Fergal Martin, Diego De Panis
Genome Annotation and Other Post-Assembly Workflows for the Tree of Life
BioHackrXiv Preprints· 2024DOI
Tom Brown, Kathleen A. Collier, Fernando Cruz, Anestis Gkanogiannis, Sagane Joye-Dind, Yannis Nevers, Stepan Saenko, Tyler Alioto, Anthony Bretaudeau, Michael Charleston, Phuong Duy Doan, Christoph Hahn, Thomas W. Harrop, Katie E Herron, Fredrick Kebaso,
Harmonising genomics research excellence and stakeholder needs in conservation management
· 2024DOI
Elena Buzan, Christian de Guttry, Chiara Bortoluzzi, Nathaniel Street, Kay Lucek, Anna Rosling, Lino Ometto, Alice Mouton, Luísa Marins, María José Ruiz-López, José Melo-Ferreira, Elisabet Ottosson, Camila Mazzoni, Robert Waterhouse
How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map
Annual Review in Animal Biosciences· 2024DOI
Andersson, L., Bekkevold, D., Berg, F., Farrell, E.D., Felkel, S., Ferreira, M., Fuentes-Pardo, A.P., Goodall, J., Pettersson, M.
New records of aturid water mites from Portugal, with the integrative description of one new species (Acari, Hydrachnidia, Aturidae)
Ecologica Montenegrina· 2024DOI
Vladimir Pešić, Harry Smit, Dinis Girão, Alessio Iannucci, Elisabeth Stur, Sónia Ferreira
The InBIO Barcoding Initiative Database: DNA barcodes of Iberian Bees
Biodiversity Data Journal· 2024DOI
Wood T, Gaspar H, Divelec RL, Penado A, Silva TL, Mata V, Veríssimo J, Michez D, Castro S, Loureiro J, Beja P, Ferreira S
The InBIO Barcoding Initiative Database: DNA barcodes of Orthoptera from Portugal
Biodiversity Data Journal· 2024DOI
Sílvia Pina; Joana Pauperio; Francisco Barros; Cátia Chaves; Filipa MS Martins; Joana Pinto; Joana Veríssimo; Vanessa Mata; Pedro Beja; Sónia Ferreira
The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese moths
Biodiversity Data Journal· 2024DOI
Sónia Ferreira; Martin Corley; João Nunes; Jorge Rosete; Sasha Vasconcelos; Vanessa Mata; Joana Veríssimo; Teresa Silva; Pedro Sousa; Rui Andrade; José Manuel Grosso-Silva; Catarina J. Pinho; Cátia Chaves; Filipa MS Martins; Joana Pinto; Pamela Puppo; Antonio Muñoz-Mérida; John Archer; Joana Pauperio; Pedro Beja
Under pressure: the Critically Endangered common hamster in Hungary reached an all-time demographic low in 2024
Oryx· 2024DOI
Lajos Szatmári, Gábor Sramkó, Virág Nyíri, Tamás Cserkész
Ensembl 2024
Nucleic Acids Research· 2023DOI
Peter W Harrison et. al.
The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae)
The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae)· 2023DOI
Paolo Rosa, Thomas Wood, Teresa Luísa L. Silva, Joana Veríssimo, Vanessa A. Mata, Denis Michez, Pedro Beja, Sónia Ferreira
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered
Nucleic Acids Research· 2023DOI
Kessy Abarenkov, R Henrik Nilsson, Karl-Henrik Larsson, Andy F S Taylor, Tom W May, Tobias Guldberg Frøslev, Julia Pawlowska, Björn Lindahl, Kadri Põldmaa, Camille Truong, Duong Vu, Tsuyoshi Hosoya, Tuula Niskanen, Timo Piirmann, Filipp Ivanov, Allan Zirk
Deliverables (14)
Other Results (1)
Periodic Reporting for period 2 - BGE (Biodiversity Genomics Europe)