Biomic_AUTh, Center of Excellence in Metabolomics research

Widening ParticipationHORIZON-CSAID: 101079370
EC Contribution
€12,267
Consortium Size
4 orgs
Start Year
2022
Summary

BiACEM aims to link Biomic_AUTBiACEM aims to link Biomic_AUTh an interdisciplinary laboratory of the Aristotle University Thessaloniki, with three world leading metabolomics research groups: the bioinformatics team of Imperial College London, the metabolomics/lipidomics research team Fundación Universitaria San Pablo CEU (Madrid) and HMGU. Via the realization of the project, strategic partnership and networking will be developed, promoting the research status and capacity of Biomic researchers and covering existing gaps in know-how and technology. Long term aim of Biomic is to lead, develop new concepts, analytical methods, and ways to produce or analyze comprehensive datasets, furthering the application of metabolomics in life science and biomarker discovery. To reach this level, existing pinch points should be addressed. Themes identified as strengths of the advanced partners and key areas of Biomic improvement include: development and organisation of lipidomics experimentation in LC-MS, exploitation of advanced mass spectrometry acquisition and ion mobility spectrometry data, metabolite identification, effective mining and use of multiple data sets, data management, artificial intelligence tools for metabolomics data and for text mining (natural language processing), data fusion, effective biochemical interpretation. Transfer of knowledge is organised as a series of training events, webinars, e-meetings, staff exchanges and collaborative research with the advanced partners. Emphasis is also put on training on research management and setting a research management unit in Biomic. Three clinical biomarker discovery demonstration projects constitute the research element of BiACEM. Realization of the project will have major impact on Biomic, their collaborators and the Greek metabolomics ecosystem as it will remedy weaknesses, and provide new, timely and necessary technological solutions for the first time to Greek scientists, promoting level or research and innovation.

Consortium (4)

Project Results (14)

Source: CORDIS, the EU research results database.

Publications (12)
Enhanced Metabolite Mapping via ChEBI Ontology
· 2026DOI
Alexandra Tignouria, Goncalo Gomes da Graca, Helen Gika, Georgios Theodoridis, Tim Ebbels
Quantitative profiling of aromatic amino acids and their host–microbial co-metabolites in human urine via UPLC–MS/MS
Journal of Chromatography A· 2026DOI
Domniki Gallou, Olga Begou, Helen Gika, Vasiliki Sarli, Ian D. Wilson, Georgios Theodoridis
What’s in a name? Metabolite identification: challenges and pitfalls in untargeted metabolomics
Metabolomics· 2026DOI
Georgios Theodoridis, Oliver Fiehn, Michal Holčapek, Royston Goodacre, Daniel Raftery, Robert Plumb, Timothy M. D. Ebbels, Michael Witting, Helen Gika, Ian D. Wilson
A Lipidomic Exploration of the Effects of High-Intensity Interval Exercise in Healthy Men after Metformin Intake
Journal of Proteome Research· 2025DOI
René Neuhaus, Thomas Meikopoulos, Ana Gradillas, Carolina Gonzalez-Riaño, Georgios Theodoridis, Stefanos Nikolaidis, Vassilis Mougios, Coral Barbas, Helen Gika, Alma Villaseñor
Analytical workflow for comprehensive blood metabolomics analysis by GC-MS. Application to children with ventilator associated pneumonia
Journal of Chromatography A· 2025DOI
M. Ioannidis, T. Mouskeftara, E. Iosifidis, M. Simitsopoulou, E. Roilides, H. Gika, María Fernanda Rey-Stolle, C. Virgiliou
MAMSI: Integration of Multiassay Liquid Chromatography–Mass Spectrometry Metabolomics Data Using Multiview Machine Learning
Analytical Chemistry· 2025DOI
Lukas Kopecky; Caroline J. Sands; María Gómez-Romero; Shivani Misra; Elizabeth J. Want; Timothy M. D. Ebbels
UHPLC-MS/MS analysis of PFAS in the serum of patients with Alzheimer's disease, mild cognitive impairment and controls: A preliminary study
Journal of Chromatography B· 2025DOI
O. Deda, S. Adams, M. Tsolaki, A. Lioupi, A.C. Tsolaki, G. Theodoridis, I.D. Wilson, R.S. Plumb, H. Gika
International Journal of Molecular Sciences
International Journal of Molecular Sciences· 2024DOI
T. Mouskeftara, G. Kalopitas, T. Liapikos,K. Arvanitakis, G. Germanidis, H. Gika
Journal of the American Chemical Society
Journal of Proteome Research· 2024DOI
Mouskeftara, Thomai, Deda, Olga, Liapikos, Theodoros, Panteris, Eleftherios, Karagiannidis, Efstratios, Papazoglou, Andreas, Gika, Helen
Recent Advances in Metabolomics and Lipidomics Studies in Human and Animal Models of Multiple Sclerosis
Metabolites· 2024DOI
Petros Pousinis; Olga Begou; Marina Kleopatra Boziki; Nikolaos Grigoriadis; Georgios Theodoridis; Helen Gika
Talanta
Talanta· 2024DOI
Thomas Meikopoulos, Olga Begou, Helen Gika, G. Theodoridis
Untargeted Blood Lipidomics Analysis in Critically Ill Pediatric Patients with Ventilator-Associated Pneumonia: A Pilot Study
Metabolites· 2024DOI
C. Virgiliou, O. Begou, A. Ftergioti, M. Simitsopoulou, M. Sdougka, E. Roilides, G. Theodoridis, H, Gika, E. Iosifidis
Deliverables (2)