Integration of fisheries and ecological data to support spatial management: The case of blackspot seabream (Pagellus bogaraveo) in the western Mediterranean Sea
Fisheries Research· 2026DOI Diego Panzeri, Juan Gil Herrera, Cristina García-Ruíz, Lucia Rueda, Meryem Benziane, Mohammed Idrissi Malouli, Pilar Hernández, Simone Libralato
The Geography of Mediterranean Benthic Communities Under Climate Change
Global Change Biology· 2026DOI Damiano Baldan, Yohann Chauvier‐Mendes, Diego Panzeri, Gianpiero Cossarini, Cosimo Solidoro, Vinko Bandelj
"Report of the workshop ""Data Product Development for Modeling Benthic Carbon Processes in the Arctic"""
Szczepanek, Marta; Palacz, Artur; Kedra, Monika; Krzymiński, Dominik; Bluhm, Bodil; Dannheim, Jennifer; Gregoire, Marilaure
<scp>FEISTY</scp> Fortran library and R package to integrate fish and fisheries with biogeochemical models
Methods in Ecology and Evolution· 2025DOI Yixin Zhao, P. Daniël van Denderen, Rémy Denéchère, Jonathan E. Falciani, Nis S. Jacobsen, Themistoklis Konstantinopoulos, Daniel Ottmann, Colleen M. Petrik, Karline Soetaert, Charles A. Stock, Ken H. Andersen
A macrozoobenthic data set of the Black Sea northwestern shelf
Séverine Chevalier; Olivier Beauchard; Adrian Teacă; Tatiana Begun; Valentina Todorova; Luc Vandenbulcke; Karline Soetaert; Marilaure Grégoire
Biogeosciences
Grigoratou, Maria; Menden-Deuer, Susanne; McQuatters-Gollop, Abigail; Arhonditsis, George; Artigas, Luis Felipe; Ayata, Sakina-Dorothée; Bedikoğlu, Dalida; Beisner, Beatrix; Chen, Bingzhang; Davies, Claire; Diarra, Lillian; Elegbeleye, Owoyemi; Everett, Jason; Garcia, Tatiane; Gentleman, Wendy; Gonçalves, Rodrigo Javier; Guy-Haim, Tamar; Halfter, Svenja; Hinners, Jana; Horaeb, Richard; Huggett, Jenny; Johnson, Catherine; Kavanaugh, Maria; Lara-Lopez, Ana; Lindemann, Christian; López-Abbate, Celeste; Messié, Monique; Möller, Klas Ove; Montes, Enrique; Muller-Karger, Frank; Neeley, Aimee; Olaleye, Yusuf; Palacz, Artur; Poulton, Alex; Prowe, A; Ratnarajah, Lavenia; Rodríguez, Luzmila; Rodríguez-Flórez, Clara Natalia; Rodriquez-Santiago, Aurea; Rousseaux, Cecile; Saad, Juan Francisco; Santi, Ioulia; Soccodato, Alice; Stern, Rowena; Våge, Selina; Varkitzi, Ioanna; Richardson, Anthony
Control of simulated ocean ecosystem indicators by biogeochemical observations
Progress in Oceanography· 2025DOI S. Ciavatta, P. Lazzari, E. Álvarez, L. Bertino, K. Bolding, J. Bruggeman, A. Capet, G. Cossarini, F. Daryabor, L. Nerger, M. Popov, J. Skákala, S. Spada, A. Teruzzi, T. Wakamatsu, V.Ç. Yumruktepe, P. Brasseur
Data-Informed Inversion Model (DIIM): a framework to retrieve marine optical constituents using a three-stream irradiance model
Geoscientific Model Development· 2025DOI Carlos Enmanuel Soto López; Mirna Gharbi Dit Kacem; Fabio Anselmi; Paolo Lazzari
Deliverable 3.2 Offline simulation tool
Bruggeman, Jorn; Gao, Shuang; Wakamatsu, Tsuyoshi; Partridge, Dale
EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters
Geoscientific Model Development· 2025DOI Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, Stefano Ciavatta
Estimating Seasonal Global Sea Surface Chlorophyll-a with Resource-Efficient Neural Networks
Gabriela Martinez-Balbontin; Julien Jouanno; Rachid Benshila; Julien Lamouroux; Coralie Perruche; Stefano Ciavatta
Global Ecology and Conservation
Global Ecology and Conservation· 2025DOI Maria Inês Pinheiro da Silva; Marta Tobeña; Miguel Machete; Mónica A. Silva; Sergi Pérez-Jorge
Including different mesozooplankton feeding strategies in a biogeochemical ocean model impacts global ocean biomass and carbon cycle
EGUsphere [preprint]· 2025DOI Lisa Di Matteo; Fabio Benedetti; Sakina-Dorothée Ayata; Olivier Aumont
Journal of Advances in Modeling Earth Systems
Journal of Advances in Modeling Earth Systems· 2025DOI Daan Reijnders; Michael Charles Denes; Siren Rühs; Oyvind Breivik; Tor Nordam; Erik Van Sebille
Journal of Biogeography
Journal of Biogeography· 2025DOI Damiano Baldan; David Cunillera‐Montcusí; Marco Reale; Stefano Piani; Fabrizio Gianni; Serena Zunino; Gianpiero Cossarini; Stefano Salon; Cosimo Solidoro; Vinko Bandelj
Long-term plankton and environmental monitoring dataset from the Marine Protected Area of the Iroise Marine Natural Park (2010–2023) in the Iroise Sea, North Atlantic
Laetitia Drago; Caroline Cailliau; Patrick Pouline; Beatriz Beker; Laëtitia Jalabert; Jean-Baptiste Romagnan; Sakina-Dorothée Ayata
Modeling plankton diversity in a coupled optical-biogeochemical ocean framework
Frontiers in Ecology and Evolution· 2025DOI Eva Álvarez; Guido Occhipinti; Gianpiero Cossarini; Cosimo Solidoro; Cosimo Solidoro; Paolo Lazzari; Paolo Lazzari
Multi-model approach for statistical downscaling and bias correction of Earth system model outputs for marine ecosystem impact applications
ICES Journal of Marine Science· 2025DOI Oliveros-Ramos, Ricardo; Shin, Yunne-Jai; Gutierrez, Dimitri; Trenkel, Verena
NECCTON Benthic process model developments D6.3
Lessin, Gennadi; Millington, Rebecca; Mudde, Quinten; Soetaert, Karline
NECCTON Integrated pelagic model developments (D5.2)
Clark, James; Samuelson, Annette; Yumruktepe, Çağlar; Albernhe, Sarah; Lindenthal, Anja; Hahn, Josefine; Belharet, Mokrane; Millington, Rebecca; Bonino, Giulia; Choblet, Mathurin; Powley, Helen; Galli, Giovanni; Cossarini, Gianpiero; Lazzari, Paolo; Alvarez, Eva; Macé, Loïc; Skakala, Jozef
NECCTON report on developments of tools for mapping integrated pressures, exposure, and risk in T8.4 (D8.3)
de Mora, Lee; Canu, Donata; Laurent, Celia; Rosati, Ginevra; Liubartseva, Svitlana; Xie, Zhiyong; Bie, Johannes; van Se, Er; Denes, Michael; Triantafyllou, George; Galli, Giovanni; Beauchard, Olivier
NECCTON Report on integrated model developments for Suspended Particulate Matter (SPM) and habitat suitability (D6.2).
Grégoire, Marilaure; Soetaert, Karline; Chevalier, Severine; Choblet, Mathurin; Mudde, Quinten; Baldan, Damiano; Lessin, Gennadi; Butenschon, Momme; Bonino, Giulia; Staneva, Joanna; Bandelj, Vinko; Cossarini, Gianpiero
NECCTON Report on integrated modelling of pollutants and single pressures D8.2
Canu D., Rosati G., Denes M., van Sebille E., Liubartseva S., Beauchard O., Soetaert K., Tamvakis I., Bieser J., Xie Z.
NECCTON Software repository of ML and DA algorithms of T4.2.1-T4.4.3 (D4.3)
Cossarini, Gianpiero; Brajard, Julien; Bernigaud, Antoine; Yumruktepe, Veli Çağlar; Banerjee, Deep; Skakala, Jozef; Tonelli, Teresa; Puglia, Marco; Soto, Marco; Drago, Laetitia; Ayata, Sakina-Dorothée; Verezemskaya, Polina; Dechenne, Abel; Barth, Alexander; Greenberg, David
NECCTON: Report on all 16 model coupling developments (D7.2)
Daewel, Ute; Trenkel, Verena; Vijayakumaran, Vijith; Lehodey, Patrick; Huret, Martin; Millington, Rebecca; Powley, Helen; Andersen, Ken H; Steenbeek, Jeroen; Pérez-Jorge, Sergi; Travers-Trolet, Morgane; Gkanasos, Thanos; Tsiaras, Kostas; Libralato, Simone; Panzeri, Diego; Ingrosso, Maurizio; Sailley, Sevrine; Yu, Haolin; Rose, Kenneth A.; Grégoire, Marilaure; Lindenthal, Anja; Hahn, Josefine; Merillet, Laurene; Ciavatta, Stefano
The role of seagrass meadows (Posidonia oceanica) as microplastics sink and vector to benthic food webs
Marine Pollution Bulletin· 2025DOI Dionysia Rigatou, Vasilis Gerakaris, Nikoletta Digka, Argyro Adamopoulou, Danae Patsiou, Yannis Hatzonikolakis, Kostas Tsiaras, Catherine Tsangaris, Christina Zeri, Helen Kaberi, Dionysios E. Raitsos
Three-stream modelling of radiative transfer for the simulation of Black Sea biogeochemistry in a NEMO framework
Macé, Loïc; Vandenbulcke, Luc; Brankart, Jean-Michel; Grailet, Jean-François; Brasseur, Pierre; Grégoire, Marilaure
Aquatic deoxygenation as a planetary boundary and key regulator of Earth system stability
Nature Ecology and Evolution· 2024DOI Kevin C. Rose; Erica M. Ferrer; Stephen R. Carpenter; Sean A. Crowe; Sarah C. Donelan; Véronique C. Garçon; Marilaure Grégoire; Stephen F. Jane; Peter R. Leavitt; Lisa A. Levin; Andreas Oschlies; Denise Breitburg
Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model
Scientific Reports· 2024DOI Paolo Lazzari, Mirna Gharbi Dit Kacem, Eva Álvarez, Ilya Chernov, Vincenzo Vellucci
Earth System Science Data
9th edition of the Copernicus Ocean State Report (OSR9)· 2024DOI Sarah Albernhe; Thomas Gorgues; Olivier Titaud; Patrick Lehodey; Christophe Menkes; Anna Conchon
Ecosystem modelling for the ocean decade - facing the challenge
TDX (Tesis Doctorals en Xarxa)· 2024DOI Steenbeek, Jeroen
Ensemble reconstruction of missing satellite data using a denoising diffusion model: application to chlorophyll <i>a</i> concentration in the Black Sea
Alexander Barth; Julien Brajard; Aida Alvera-Azcárate; Bayoumy Mohamed; Charles Troupin; Jean-Marie Beckers
Estimating Fishing Exploitation Rates to Simulate Global Catches and Biomass Changes of Pelagic and Demersal Fish
P. D. van Denderen, N. Jacobsen, K. H. Andersen, J. L. Blanchard, C. Novaglio, C. A. Stock, C. M. Petrik
Food chain without giants: modelling the trophic impact of bowhead whaling on little auk populations in the Atlantic Arctic
Proceedings of the Royal Society B: Biological Sciences· 2024DOI Amaury Thepault; Ana S. L. Rodrigues; Laetitia Drago; David Grémillet
Global characterization of modelled micronekton in biophysically defined provinces
Progress in Oceanography· 2024DOI S. Albernhe, T. Gorgues, P. Lehodey, C. Menkes, O. Titaud, S. Magon De La Giclais, A. Conchon
Global Gridded Emission Inventory of Organophosphate Flame Retardants from 2010 to 2020
Environmental Science & Technology· 2024DOI Haibo Ma; Chao Wang; Huabing Suo; Yandi Huang; Yuanhui Huo; Gang Yang; Yu Yan; Tao Huang; Hong Gao; Jianmin Ma; Zhiyong Xie
Identifying Gaps in the Protection of Mediterranean Seagrass Habitats Using Network‐Based Prioritisation
Diversity and Distributions· 2024DOI Damiano Baldan; Yohann Chauvier‐Mendes; Fabrizio Gianni; Gianpiero Cossarini; Vinko Bandelj
Modeling the high-impact-low-probability oil spills in the Mediterranean
· 2024
Liubartseva, S., Coppini, G., Daniel, P., Hoxhaj, M.
NECCTON Best practices for implementing new BGC process modules in CMEMS/FABM
Bruggeman J, Yumruktepe VC, Lazzari P, Albernhe S, Daewel U, Schnedler-Meyer NA,
NECCTON D4.2 Assessment of L2 PRISMA production chain, outputs and transferability
Braga, Federica; Profeti, Giuliana; Lazzari, Paolo; Álvarez, Eva; Marco Scarpa, Gian; Manfè, Giorgia; Gonzalez Vilas, Luis; Skakala, Jozef; Brando, Vittorio
NECCTON: Tools of dissemination and visualization of the NECCTON products (D2.2)
Zenodo· 2024
Romero, L., Di Medio, E., Moreno, P., & Marsà, A.
Nonlinear Processes in Geophysics
Nonlinear Processes in Geophysics· 2024DOI Pierard, Claudio M.; Rühs, Siren; Gómez-Navarro, Laura; Denes, Michael C.; Meirer, Florian; Penduff, Thierry; van Sebille, Erik
Partial recovery of macrozoobenthos on the northwestern shelf of the Black Sea
Marine Pollution Bulletin· 2024DOI Séverine Chevalier, Olivier Beauchard, Adrian Teacă, Karline Soetaert, Marilaure Grégoire
Partitioning climate uncertainty in ecological projections: Pacific oysters in a hotter Europe
Ecological Informatics· 2024DOI Robert J. Wilson, Susan Kay, Stefano Ciavatta
plasticparcels: A python package for marine plasticdispersal simulations and parameterisation development usingparcels
Journal of Open Source Software· 2024DOI Michael C. Denes, Erik van Sebille
The role of squid for food web structure and community-level metabolism
Ecological Modelling· 2024DOI Rémy Denéchère, P. Daniël van Denderen, Ken H. Andersen
"NECCTON ""Initial data management plan (DMP)"" D1.1"
Ciavatta S, Biardeau A, Giunta V, Derval C, Romero L, Braga F
A multi-model selection approach for statistical downscaling and bias correction of Earth System Model outputs for regional impact applications
ESS Open Archive (Authorea, Inc.)· 2023DOI Ricardo Oliveros-Ramos; Yunne-Jai Shin; Dimitri Gutierrez; Verena M Trenkel
Chromophoric dissolved organic matter dynamics revealed through the optimization of an optical–biogeochemical model in the northwestern Mediterranean Sea
Álvarez E, Cossarini G, Teruzzi A, Bruggeman J, Bolding K, Ciavatta S, Vellucci V, D'Ortenzio F, Antoine D, Lazzari P.
Description and guideline on the NECCTON-algo GitHub organization
Brajard J, Barth A, Ayata, S, Barga F, Lazzari P, Greenberg D
Hybrid covariance super-resolution data assimilation
Sébastien Barthélémy; Julien Brajard; Laurent Bertino; François Counillon
Investigating ecosystem connections in the shelf sea environment using complex networks
Higgs, Ieuan; Skákala, Jozef; Bannister, Ross; Carrassi, Alberto; Ciavatta, Stefano
NECCTON Technical specification of the pollutants and stressors products (D8.1)
Canu D, Rosati G, Triantafyllou G, Van Sebille E, Denes M, Liubartseva S, Bieser J, Xie Z, Beauchard O, Soetaert K, Galli G
NECCTON: Technical specification of the benthic products (D6.1)
Grégoire M, Soetaert K, Lessin G, Choblet M, Mudde Q, Cossarini G, Bandelj V, Butenschön M, Hahn J, Staneva J,
NECCTON: Technical specification of the Higher Trophic Level products (D7.1)
Trenkel V, Grégoire M, Lehodey P, Travers-Trolet M, Daewel U, Vijayakumaran V, Pérez-Jorge S, Andersen KH, Huret M, Powley H, Sailley S, Tsiaras K, Steenbeek J, Conchon A
NECCTON: Technical specification of the pelagic lower trophic level products (D5.1)
Clark J, Kay S, Samuelsen A, Albernhe S, Butenschön M, Powley H, Cossarini G, Lazzari P, Hahn J, Braga F, Perruche C, Grégoire M,
The importance of trait selection on the meaning of functional diversity in benthic studies
Front. Mar. Sci.· 2023DOI Olivier Beauchard
Trawling-induced change in benthic effect trait composition – A multiple case study
Frontiers in Marine Science· 2023DOI Olivier Beauchard, Clare Bradshaw, Stefan Bolam, Justin Tiano, Clément Garcia, Emil De Borger, Pascal Laffargue, Mats Blomqvist, Irini Tsikopoulou, Nadia K. Papadopoulou, Christopher J. Smith, Jolien Claes, Karline Soetaert, Marija Sciberras