Integrating Multi-Disciplinary Expertise in a Learning and Adaptive European Pandemic Preparedness System

HealthHORIZON-RIAID: 101094685
EC Contribution
€29,996
Consortium Size
5 orgs
Start Year
2023
Summary

The COVID-19 pandemic has exposed a global need for accelerating research, improving surveillance, and efficiently developing countermeasures against pathogens with epidemic and pandemic potential. LEAPS aims to demonstrate the value and feasibility of a pro-active policy-supporting strategy for genomic surveillance and for pandemic preparedness and response, by delivering a system-wide stakeholder-validated proof of concept, validated in 4 EU countries, of a learning and adaptive European pandemic preparedness system against pathogen X.  LEAPS will fill the gaps observed by global, EU (HERA) and national stakeholders in pandemic response by demonstrating the feasibility of combining genomic One Health surveillance, with genomic epidemiologic modeling for detailed pathogen understanding and precise public health intervention design. LEAPS formalizes dynamic health emergency threat assessment linked to the initiation of governance mechanisms to enable timely decisions in crucial, early stages of an outbreak.  LEAPS will develop protocols and models for accelerated medical countermeasure development, availability and accessibility. Based on resulting highly effective intervention strategies, timely countermeasure access and governance mechanisms, model-based policy support is proposed to health authorities for effective, implementable, stakeholder co-created epidemic response scenarios against pathogen X. Scenarios are evaluated on health, socio-economic, and sustainability impact. LEAPS brings together a unique multidisciplinary team with optimal complementary expertise and experience. LEAPS will interact regularly with medical and scientific communities, HERA and health authorities in order to disseminate relevant and accessible information, and during non-emergency periods LEAPS will validate a roadmap for large-scale implementation of LEAPS methodology by EU level, and national authorities and stakeholders in an ecosystem of interlinked actors.

Consortium (5)

Project Results (17)

Source: CORDIS, the EU research results database.

Publications (11)
BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference
Nature Methods· 2025DOI
Guy Baele; Xiang Ji; Gabriel W. Hassler; John T. McCrone; Yucai Shao; Zhenyu Zhang; Andrew J. Holbrook; Philippe Lemey; Alexei J. Drummond; Andrew Rambaut; Marc A. Suchard
Broad sarbecovirus neutralization by combined memory B cell antibodies to ancestral SARS-CoV-2
iScience· 2025DOI
Cyril Planchais, Ignacio Fernández, Benjamin Chalopin, Timothée Bruel, Pierre Rosenbaum, Maxime Beretta, Jordan D. Dimitrov, Laurine Conquet, Flora Donati, Matthieu Prot, Françoise Porrot, Delphine Planas, Isabelle Staropoli, Florence Guivel-Benhassine, Eduard Baquero, Sylvie van der Werf, Ahmed Haouz, Etienne Simon-Lorière, Xavier Montagutelli, Bernard Maillère, Félix A. Rey, Pablo Guardado-Calvo, Hervé Nozach, Olivier Schwartz, Hugo Mouquet
International importance and spread of SARS-CoV-2 variants Alpha, Delta, and Omicron BA.1 into Spain
Communications Medicine· 2025DOI
Gallego-Garcia, Pilar; Hong, Samuel L.; Bollen, Nena; Dellicour, Simon; Baele, Guy; Suchard, Marc A.; Lemey, Philippe; Posada, David
Large-scale genomic surveillance reveals immunosuppression drives mutation dynamics in persistent SARS-CoV-2 infections
Crossref· 2025DOI
Mark P. Khurana; Alexandros Katsiferis; Neil Scheidwasser; Mathilde Marie Brunnich Sloth; Jacob Curran-Sebastian; Christian Morgenstern; Man-Hung Eric Tang; Jannik Fonager; Morten Rasmussen; Marc Stegger; Charles Whittaker; Sune Lehmann; Laust H. Mortensen; Pikka Jokelainen; Moritz U.G. Kraemer; Neil M. Ferguson; Mahan Ghafari; Tyra G. Krause; David A. Duchene; Samir Bhatt
Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion
Nature Communications· 2024DOI
Delphine Planas, Isabelle Staropoli, Vincent Michel, Frederic Lemoine, Flora Donati, Matthieu Prot, Francoise Porrot, Florence Guivel-Benhassine, Banujaa Jeyarajah, Angela Brisebarre, Océane Dehan, Léa Avon, William Henry Bolland, Mathieu Hubert, Julian Buchrieser, Thibault Vanhoucke, Pierre Rosenbaum, David Veyer, Hélène Péré, Bruno Lina, Sophie Trouillet-Assant, Laurent Hocqueloux, Thierry Prazuck, Etienne Simon-Loriere, Olivier Schwartz
Escape of SARS-CoV-2 Variants KP.1.1, LB.1, and KP.3.3 From Approved Monoclonal Antibodies
Pathogens and Immunity· 2024DOI
Delphine Planas, Isabelle Staropoli, Cyril Planchais, Emilie Yab, Banujaa Jeyarajah, Yannis Rahou, Matthieu Prot, Florence Guivel-Benhassine, Frederic Lemoine, Vincent Enouf, Etienne Simon-Loriere, Hugo Mouquet, Marie-Anne Rameix-Welti, Olivier Schwartz
HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X
Bioinformatics· 2024DOI
Guy Baele; Luiz M Carvalho; Marius Brusselmans; Gytis Dudas; Xiang Ji; John T McCrone; Philippe Lemey; Marc A Suchard; Andrew Rambaut
Modeling memory B cell responses in a lymphoid organ-chip to evaluate mRNA vaccine boosting
Journal of Experimental Medicine· 2024DOI
Raphaël Jeger-Madiot, Delphine Planas, Isabelle Staropoli, Hippolyte Debarnot, Jérôme Kervevan, Héloïse Mary, Camilla Collina, Barbara F. Fonseca, Rémy Robinot, Stacy Gellenoncourt, Olivier Schwartz, Lorna Ewart, Michael Bscheider, Samy Gobaa, Lisa A. Chakrabarti
On the importance of assessing topological convergence in Bayesian phylogenetic inference
Virus Evolution· 2024DOI
Marius Brusselmans; Luiz Max Carvalho; Samuel L. Hong; Jiansi Gao; Frederick A Matsen IV; Andrew Rambaut; Philippe Lemey; Marc A Suchard; Gytis Dudas; Guy Baele
Structural basis of TMPRSS2 zymogen activation and recognition by the HKU1 seasonal coronavirus
Cell· 2024DOI
Ignacio Fernández, Nell Saunders, Stéphane Duquerroy, William H. Bolland, Atousa Arbabian, Eduard Baquero, Catherine Blanc, Pierre Lafaye, Ahmed Haouz, Julian Buchrieser, Olivier Schwartz, Félix A. Rey
Beta-variant recombinant booster vaccine elicits broad cross-reactive neutralization of SARS-CoV-2 including Omicron variants
Nat CommunDOI
Planas D, Peng L, Zheng L, Guivel-Benhassine F, Staropoli I, Porrot F, Bruel T, Bhiman JN, Bonaparte M, Savarino S, de Bruyn G, Chicz RM, Moore PL, Schwartz O, Sridhar S.
Deliverables (5)
Data Management Plan
Documents, reports
Websites, patent fillings, videos etc.
Data Management Plan
Other Results (1)
Periodic Reporting for period 1 - LEAPS (Integrating Multi-Disciplinary Expertise in a Learning and Adaptive European Pandemic Preparedness System)