A gap and synergy analysis of the European research infrastructure (RI) ecosystem: advancing the novel GRACE-RI dedicated to plant genetic resources
Annals of Botany· 2025DOI Domenico De Paola, Francesca Taranto, Soraya Mousavi, Francesco Mercati, Wilma Sabetta, Marina Tumolo, Sharif Islam, Roland Pieruschka, Andrea Scaloni, Anne-Francoise Adam-Blondon, Lorenzo Maggioni, Sandra Goritschnig, Filippo Guzzon, Massimo Ianigro, Giovanni Giuseppe Vendramin, Giovanni Giuliano, Gabriele Bucci
A proposal for genebank metrics to enhance collection management
Plant Genetic Resources: Characterization and Utilization· 2025DOI Theo van Hintum, Bela Bartha, Claudio Niggli, Alvina Avagyan, Sylvia Vogl, Lisa Achathaler, Vojtech Holubec, Ludmilla Papouskova, Francesco Ferrari, Graziano Rossi, Attila Simon, Lajos Horvath, Renata Kowalik, Maja Boczkowka, Stephan Weise, Markus Oppermann, Maarten van Zonneveld, Matija Obreza, Erik Wijnker, Noam Chayut, Fadia Chairi, Johan Axelsson, Lise Lykke Steffensen, Filippo Guzzon
A significantly enhanced role for plant genetic resource centres in linking in situ and ex situ conservation to aid user germplasm access
Genetic Resources· 2025DOI Nigel Maxted, Anne-Françoise Adam-Blondon, Catherine Hazel Aguilar, Ana Maria Barata, Béla Bartha, Riccardo Bocci, Domenico De Paola, Heli S. Fitzgerald, Louis John Fresta, Pietro Fusani, Giovanni Giuliano, Filippo Guzzon, Philipp Holzherr, Vojtěch Holubec, José María Iriondo Alegría, Juozas Labokas, Lorenzo Maggioni, Joana Magos Brehm, Anna Palmé, Jade Phillips, Jaime Prohens, Lorenzo Raggi, Parthenopi Ralli, Dainis Rungis, Karuine Sarikyan, Jelka Šuštar-Vozlič, Imke Thormann, Goran Zdunić
Association analyses reveal both anthropic and environmental selective events during eggplant domestication
The Plant Journal· 2025DOI Emmanuel Omondi, Lorenzo Barchi, Luciana Gaccione, Ezio Portis, Laura Toppino, Maria Rosaria Tassone, David Alonso, Jaime Prohens, Giuseppe Leonardo Rotino, Roland Schafleitner, Maarten van Zonneveld, Giovanni Giuliano
Benchmarking of low coverage sequencing workflows for precision genotyping in eggplant
BMC Plant Biology· 2025DOI Virginia Baraja-Fonseca, Andrea Arrones, Santiago Vilanova, Mariola Plazas, Jaime Prohens, Aureliano Bombarely, Pietro Gramazio
Community seedbanks in Europe: their role between ex situ and on-farm conservation
Genetic Resources· 2025DOI Riccardo Bocci, Béla Bartha, Helene Maierhofer, Michaela Arndorfer, Michele Salvan
Editorial: Ex situ conservation of plant genetic resources in Europe – A journey through history, mission, challenges and future opportunities
Genetic Resources· 2025DOI Filippo Guzzon, Sandra Goritschnig, Nora Capozio, Lorenzo Maggioni
Graph-based pangenomes and pan-phenome provide a cornerstone for eggplant biology and breeding
Nature Communications· 2025DOI Luciana Gaccione, Laura Toppino, Marie Bolger, Maximilian Schmidt, Maria Rosaria Tassone, Maria Sulli, Emily Idahl, David Alonso, Giuseppe Aprea, Paola Ferrante, Véronique Lefebvre, Hatice Filiz Boyaci, Roland Schafleitner, Stefano Gattolin, Richard Finkers, Matthijs Brouwer, Arnaud Bovy, Jaime Prohens, Ezio Portis, Sergio Lanteri, Giuseppe Leonardo Rotino, Giovanni Giuliano, Björn Usadel, Lorenzo Barchi
History and current status of plant genetic resources conserved and maintained by the Hungarian central genebank
Genetic Resources· 2025DOI Zoltan Ay, Attila Simon, Adrienn Gyurkó, Evelin Fekete, Balázs Horváth, Borbála Baktay
Metabolome guided treasure hunt - learning from metabolic diversity
Journal of Plant Physiology· 2025DOI Esra Karakas, Mustafa Bulut, Alisdair Fernie
Organization of plant Biological Resource Centers for research in France: History, evolution and current status
Genetic Resources· 2025DOI Valerie Bergheaud, Jean-Marc Audergon, Arnaud Bellec, Anne Delaunay, Jérôme Duminil, Stéphane Dussert, Florence Esnault, Emmanuel Geoffriau, Brigitte Gouesnard, Christophe Jenny, Alain Label, Phili
Strengthening European research cooperation on plant genetic resources conservation and use
Genetic Resources· 2025DOI Sandra Goritschnig, Stephan Weise, Filippo Guzzon, Lorenzo Maggioni, Theo Van Hintum, Lise Lykke Steffensen, Nils Stein, Giovanni Giuliano
The use of web resources for metabolomics in horticultural crops
Horticulture Advances· 2025DOI Esra Karakas; Mustafa Bulut; Alisdair R. Fernie
What metabolomics has taught us about tomato fruit ripening and quality
Journal of Experimental Botany· 2025DOI Esra Karakas, Alisdair R Fernie
A novel tomato interspecific (<i>Solanum lycopersicum</i> var. <i>cerasiforme</i> and <i>Solanum pimpinellifolium</i>) MAGIC population facilitates trait association and candidate gene discovery in untapped exotic germplasm
Horticulture Research· 2024DOI Andrea Arrones, Oussama Antar, Leandro Pereira-Dias, Andrea Solana, Paola Ferrante, Giuseppe Aprea, Mariola Plazas, Jaime Prohens, María José Díez, Giovanni Giuliano, Pietro Gramazio, Santiago Vilanova
Discrimination of 14 olive cultivars using morphological analysis and machine learning algorithms
Frontiers in Plant Science· 2024DOI Konstantinos N. Blazakis, Danil Stupichev, Maria Kosma, Mohamad Ali Hassan El Chami, Anastasia Apodiakou, George Kostelenos, Panagiotis Kalaitzis
Quality management in a genebank environment: Principles and experiences at the Centre for Genetic Resources, The Netherlands (CGN)
Genetic Resources· 2024DOI Theo Van Hintum, Erik Wijker
Solanum pennellii (LA5240) backcross inbred lines (BILs) for high resolution mapping in tomato
The plant Journal· 2024DOI Torgeman, S., Pleban T., Goldberg Y., Ferrante Paola, Aprea Giuseppe, Giuliano Giovanni, Yichie Y., Fisher J., Zemach I., Koch A., Rochsar E., Oved M., Bandel K., and Zamir D
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
Salojärvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, Muñoz DS, Meidanis J, Paschoal AR, Bawin Y, Krabbenhoft TJ, Wang ZQ, Fleck SJ, Aussel R, Bellanger L, Charpagne A, Fournier C, Kassam M, Lefebvre G, Mé
Unveiling pepper immunity’s robustness to temperature shifts: insights for empowering future crops
Horticulture Research· 2024DOI William Billaud, Judith Hirsch, Valentin Ribaut, Lucie Tamisier, Anne Massire, Marion Szadkowski, Félicie Lopez-Lauri, Benoît Moury, Véronique Lefebvre
A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology
Ranawaka B, An J, Lorenc MT, Jung H, Sulli M, Aprea G, Roden S, Llaca V, Hayashi S, Asadyar L, LeBlanc Z, Ahmed Z, Naim F, de Campos SB, Cooper T, de Felippes FF, Dong P, Zhong S, Garcia-Carpintero V, Orzaez D, Dudley KJ, Bombarely A, Bally J, Winefield C
A new wild emmer wheat panel allows to map new loci associated with resistance to stem rust at seedling stage
The Plant Genome· 2023DOI Anna Maria Mastrangelo, Pablo Roncallo, Oadi Matny, Radim Čegan, Brian Steffenson, Viviana Echenique, Jan Šafář, Raffaella Battaglia, Delfina Barabaschi, Luigi Cattivelli, Hakan Özkan, Elisabetta Mazzucotelli
Analysis of >3,400 worldwide eggplant accessions reveals two independent domestication events and multiple migration-diversification routes
The Plant Journal· 2023DOI Barchi L, Aprea G, Rabanus-Wallace MT, Toppino L, Alonso D, Portis E, Lanteri S, Gaccione L, Omondi E, van Zonneveld M, Schafleitner R, Ferrante P, Börner A, Stein N, Díez MJ, Lefebvre V, Salinier J, Boyaci HF, Finkers R, Brouwer M, Bovy AG, Rotino GL, Pr
Complex evaluation of wild pear
Acta Universitatis Sapientiae Agriculture and Environment· 2023DOI Gyurko, Adrienn; Baktay, Borbala; Varga, Anna; Szani, Zsolt
Conventional and new genetic resources for an eggplant breeding revolution
Journal of Experimental Botany· 2023DOI Gramazio, P.; Alonso, D.; Arrones, A.; Villanueva, G.; Plazas, M.; Toppino, L.; Barchi, L.; Portis, E.; Ferrante, P.; Lanteri, S.; Rotino, G.L.; Giuliano, G.; Vilanova, S.; Prohens, J.
Genealogical tracing of Olea europaea species and pedigree relationships of var. europaea using chloroplast and nuclear markers
BMC Plant Biology· 2023DOI Mariotti, Roberto; Belaj, Angjelina; De la Rosa, Raul; Muleo, Rosario; Cirilli, Marco; Forgione, Ivano; Valeri, Maria Cristina; Mousavi, Soraya
Induction of water stress in major Solanum crops: A review on methodologies and their application for identifying drought tolerant materials
Scientia Horticulturae· 2023DOI Flores-Saavedra, Martín; Plazas, Mariola; Vilanova, Santiago; Prohens, Jaime; Gramazio, Pietro
Multi-environment association study highlights candidate genes for robust agronomic quantitative trait loci in a novel worldwide Capsicum core collection
The Plant Journal· 2023DOI McLeod L, Barchi L, Tumino G, Tripodi P, Salinier J, Gros C, Boyaci HF, Ozalp R, Borovsky Y, Schafleitner R, Barchenger D, Finkers R, Brouwer M, Stein N, Rabanus-Wallace MT, Giuliano G, Voorrips R, Paran I, Lefebvre V
Plant Sample Collection and Shipment for Multi‐omic Analyses and Phytosanitary Evaluation
Current protocols· 2023DOI Karakas, Esra; Ferrante, Paola; Schafleitner, Roland; Giuliano, Giovanni; Fernie, Alisdair R.; Alseekh, Saleh
Preservation of fruit-bearing plants under gene bank conditions
Gyurko, Adrienn; Szucs-Nagy, Vivien; Simon, Attila; Oszi, Balint; Baktay, Borbala
QTL mapping for kernel-related traits in a durum wheat x T. dicoccum segregating population
Frontiers in Plant Science· 2023DOI Ana Paola Valladares Garcia, Francesca Desiderio, Rosanna Simeone, Stefano Ravaglia, Roberto Ciorba, Agostino Fricano, Davide Guerra, Antonio Blanco, Luigi Cattivelli, Elisabetta Mazzucotelli
The genome and population genomics of allopolyploid<i>Coffea arabica</i>reveal the diversification history of modern coffee cultivars
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor Krabbenhoft, Zhen Qin Wang,
A guide to using landscape genomics for the conservation and use of plant diversity
A guide to using landscape genomics for the conservation and use of plant diversityDOI Omondi, E., Lin, Y.P. ,Zonneveld, M.
Resequencing and phenotyping of the first highly inbred eggplant multiparent population reveal SmLBD13 as a key gene associated with root morphology
Andrea Arrones , Virginia Baraja-Fonseca , Andrea Solana , Mariola Plazas , Salvador Soler , Jaime Prohens , Santiago Vilanova and Pietro Gramazio