Entropy and Complexity Tools Across Scales in Neuroscience: A Review
Rodrigo Cofré, Alain Destexhe
Mapping Brain Lesions to Conduction Delays: The Next Step for Personalized Brain Models in Multiple Sclerosis
Human Brain Mapping· 2025DOI C. Mazzara, A. Ziaeemehr, E. Troisi Lopez, L. Cipriano, M. Angiolelli, M. Sparaco, M. Quarantelli, C. Granata, G. Sorrentino, M. Hashemi, V. Jirsa, P. Sorrentino
Mapping global brain reconfigurations following local targeted manipulations
Proceedings of the National Academy of Sciences· 2025DOI Giovanni Rabuffo; Houefa-Armelle Lokossou; Zengmin Li; Abolfazl Ziaee-Mehr; Meysam Hashemi; Pascale P. Quilichini; Antoine Ghestem; Ouafae Arab; Monique Esclapez; Parul Verma; Ashish Raj; Alessandro Gozzi; Pierpaolo Sorrentino; Kai-Hsiang Chuang; Teodora-Adriana Perles-Barbacaru; Angèle Viola; Viktor K. Jirsa; Christophe Bernard
Region-specific mean field models enhance simulations of local and global brain dynamics
npj Systems Biology and Applications· 2025DOI Roberta Maria Lorenzi, Fulvia Palesi, Claudia Casellato, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D’Angelo
Simulating the impact of white matter connectivity on processing time scales using brain network models
Communications Biology· 2025DOI Triebkorn, Paul; Jirsa, Viktor; Dominey, Peter
The Virtual Parkinsonian Patient
npj Systems Biology and Applications· 2025DOI Marianna Angiolelli; Damien Depannemaecker; Hasnae Agouram; Jean Ŕegis; Romain Carron; Marmaduke Woodman; Letizia Chiodo; Paul Triebkorn; Abolfazl Ziaeemehr; Meysam Hashemi; Alexandre Eusebio; Viktor Jirsa; Pierpaolo Sorrentino
A computational approach to evaluate how molecular mechanisms impact large-scale brain activity
Nature Computational Science· 2024DOI Alain Destexhe; Maria Sacha; Federico Tesler; Rodrigo Cofre
A lesion‐aware automated processing framework for clinical stroke magnetic resonance imaging
Human Brain Mapping· 2024DOI Patrik Bey; Kiret Dhindsa; Amrit Kashyap; Michael Schirner; Jan Feldheim; Marlene Bönstrup; Robert Schulz; Bastian Cheng; Götz Thomalla; Christian Gerloff; Petra Ritter
A Multi-Scale Study of Thalamic State-Dependent Responsiveness
PLOS Computational Biology· 2024DOI Jorin Overwiening; Federico Tesler; Domenico Guarino; Alain Destexhe
Homeodynamic feedback inhibition control in whole-brain simulations
PLOS Computational Biology· 2024DOI Jan Stasinski; Halgurd Taher; Jil Mona Meier; Michael Schirner; Dionysios Perdikis; Petra Ritter
Inference on the Macroscopic Dynamics of Spiking Neurons
Neural Computation· 2024DOI Nina Baldy, Martin Breyton, Marmaduke M. Woodman, Viktor K. Jirsa, Meysam Hashemi
Modeling impairment of ionic regulation with extended Adaptive Exponential integrate-and-fire models
Journal of Computational Neuroscience· 2024DOI Damien Depannemaecker; Federico Tesler; Mathieu Desroches; Viktor Jirsa; Alain Destexhe
Sharing brain imaging data in the Open Science era: how and why?
The Lancet Digital Health· 2024DOI Giehl, Kathrin; Mutsaerts, Henk-Jan; Aarts, Kristien; Barkhof, Frederik; Caspers, Svenja; Chetelat, Gaël; Colin, Marie-Elisabeth; Düzel, Emrah; Frisoni, Giovanni B; Ikram, M Arfan; Jovicich, Jorge; Morbelli, Silvia; Oertel, Wolfgang; Paret, Christian; Perani, Daniela; Ritter, Petra; Segura, Bàrbara; Wisse, Laura E M; De Witte, Elke; Cappa, Stefano F; van Eimeren, Thilo
Simulation-based inference on virtual brain models of disorders
Machine Learning: Science and Technology· 2024DOI Meysam Hashemi; Abolfazl Ziaeemehr; Marmaduke M Woodman; Jan Fousek; Spase Petkoski; Viktor K Jirsa
Symmetry breaking organizes the brain’s resting state manifold
Scientific Reports· 2024DOI Jan Fousek, Giovanni Rabuffo, Kashyap Gudibanda, Hiba Sheheitli, Spase Petkoski, Viktor Jirsa
The virtual multiple sclerosis patient
Sorrentino, P.; Pathak, A.; Ziaeemehr, A.; Troisi Lopez, E.; Cipriano, L.; Romano, A.; Sparaco, M.; Quarantelli, M.; Banerjee, A.; Sorrentino, G.; Jirsa, V.; Hashemi, M.
Virtual brain twins: from basic neuroscience to clinical use
National Science Review· 2024DOI Wang, Huifang; Triebkorn, Paul; Breyton, Martin; Dollomaja, Borana; Lemarechal, Jean-Didier; Petkoski, Spase; Sorrentino, Pierpaolo; Depannemaecker, Damien; Hashemi, Meysam; Jirsa, Viktor
Virtual epilepsy patient cohort: generation and evaluation
PLOS Computational Biology· 2024DOI Borana Dollomaja; Huifang E. Wang; Maxime Guye; Julia Makhalova; Fabrice Bartolomei; Viktor K. Jirsa
White matter changes after Gamma Knife Capsulotomy in patients with intractable obsessive-compulsive disorder
Giorgio Spatola; Paul Triebkorn; Raphaelle Richieri; Christelle Baunez; Jean Farisse; Axelle Cretol; Eric Guedj; Viktor Jirsa; Jean Regis
Would you publish unrealistic model?
Biological Cybernetics· 2024DOI Damien Depannemaecker
The impact of Parkinson’s disease on striatal network connectivity and cortico-striatal drive: an in-silico study
Network Neuroscience· 2023DOI Ilaria Carannante; Martina Scolamiero; J. J. Johannes Hjorth; Alexander Kozlov; Bo Bekkouche; Lihao Guo; Arvind Kumar; Wojciech Chachólski; Jeanette Hellgren Kotaleski
Assessing Functional Connectivity Dynamics During Cognitive Tasks Involving the Dorsal Stream
Huifang E Wang, Jorge Gonzalez-Martinez, Viktor Jirsa, Patrick Chauvel, F-Xavier Alario, Catherine Liegeois-Chauvel
Biologically realistic mean field model of spiking neural networks with fast and slow inhibitory synapses
Journal of Computational NeuroscienceDOI Claudio Di Geronimo, Alain Destexhe, Matteo Di Volo
Dynamic causal modelling in probabilistic programming languages
Journal of The Royal Society InterfaceDOI Nina Baldy , Marmaduke Woodman , Viktor K. Jirsa and Meysam Hashemi
Human connectome topology directs cortical traveling waves and shapes frequency gradients
Dominik P. Koller; Michael Schirner; Petra Ritter
Multiscale modeling of neuronal dynamics in hippocampus CA1
Frontiers in Computational NeuroscienceDOI Federico Tesler; Roberta Maria Lorenzi; Adam Ponzi; Claudia Casellato; Claudia Casellato; Fulvia Palesi; Daniela Gandolfi; Claudia A. M. Gandini Wheeler Kingshott; Claudia A. M. Gandini Wheeler Kingshott; Claudia A.
NeuroEditor: a tool to edit and visualize neuronal morphologies
Frontiers in NeuroanatomyDOI Ivan Velasco; Juan J. Garcia-Cantero; Juan J. Garcia-Cantero; Juan P. Brito; Juan P. Brito; Sofia Bayona; Sofia Bayona; Luis Pastor; Luis Pastor; Susana Mata; Susana Mata
New clues for the role of cerebellum in schizophrenia and the associated cognitive impairment
Frontiers in Cellular NeuroscienceDOI Pawan Faris; Doris Pischedda; Fulvia Palesi; Egidio D’Angelo; Egidio D’Angelo
Principles and Operation of Virtual Brain Twins
IEEE Reviews in Biomedical EngineeringDOI Meysam Hashemi; Damien Depannemaecker; Marisa Saggio; Paul Triebkorn; Giovanni Rabuffo; Jan Fousek