Uncovering hidden structures in protein crystallization with coherent X-rays

MSCA (Marie Skłodowska-Curie)HORIZON-TMA-MSCA-PF-EFID: 101149230
EC Contribution
€2,227
Consortium Size
1 orgs
Start Year
2024
Summary

Diffraction and serial crystallography serve as essential tools for comprehending the functions and dynamics of proteins. However, a significant limitation to their application lies in the consistent generation of protein crystals. Thus, it becomes imperative to explore novel avenues that can facilitate and regulate protein crystallization. Classical nucleation theory does not encompass the crystallization pathway for numerous protein solutions. This proposal seeks to offer fresh experimental insights into hidden intermediate metastable structures that are hypothesized to occur during the observed anomalous crystallization mechanism. Our objective is to explore in a non-equilibrium manner the anomalous crystallization of ferritin solutions in microdroplets and characterize its time evolution. The latter is going to be accessed via X-ray Photon Correlation Spectroscopy (XPCS), which will reveal the dynamic properties of both proteins and the amorphous phase that precedes crystal formation. Additionally, we aim to quantitatively assess the role of water in this system, pertaining to protein-protein interactions, hypothesized to depend on the water structuring in the vicinity of the interacting surface. Capturing the desolvation process is crucial for the understanding of the molecular mechanism underlying the different crystallization pathways, since it has been hypothesized that the efficiency and directionality of the desolvation leads to a higher (‘classical’) or lower (‘nonclassical’) degree of protein ordering in the initial aggregates. The candidate has a strong background in experimental methods sensitive to protein dynamics and joins the host group which specializes in water experiments with microdroplets. The project utilizes the unique coherent properties of European large scale facilities, such as the European Synchrotron Radiation Facility (ESRF) and European X-ray Free Electron Laser (Eu-XFEL).

Consortium (1)

Project Results (6)

Source: CORDIS, the EU research results database.

Publications (5)
Lipoprotein diffusion in dense yolk plasma is governed by softness, hydrodynamics, and caging: Insights from MHz-XPCS
Proceedings of the National Academy of Sciences· 2026DOI
Nimmi Das Anthuparambil, Michelle Dargasz, Sonja Timmermann, Anita Girelli, Sebastian Retzbach, Johannes Möller, Wonhyuk Jo, Agha Mohammad Raza, Aliaksandr Leonau, James Wrigley, Frederik Unger, Maddalena Bin, Prince Prabhu Rajaiah, Iason Andronis, William Chèvremont, Jörg Hallmann, Angel Rodriguez-Fernandez, Jan-Etienne Pudell, Felix Brausse, Ulrike Boesenberg, Mohamed Youssef, Roman Shayduk, Rustam Rysov, Anders Madsen, Felix Lehmkühler, Michael Paulus, Fajun Zhang, Fivos Perakis, Frank Schreiber, Christian Gutt
Observation of a dynamic transition in bulk supercooled water
Nature Physics· 2026DOI
R. Tyburski, M. Shin, S. You, K. Nam, M. Soldemo, A. Girelli, M. Bin, S. Lee, I. Andronis, Y. Han, S. Jeong, R. A. Oggenfuss, R. Mankowsky, D. Babich, X. Liu, S. Zerdane, T. Katayama, H. Lemke, F. Perakis, A. Nilsson, K. H. Kim
X-ray photon correlation spectroscopy of hydrated lysozyme at elevated pressures
Physical Chemistry Chemical Physics· 2026DOI
Milla Åhlfeldt, Maddalena Bin, Anita Girelli, Iason Andronis, Aigerim Karina, Nimmi Das Anthuparambil, Fiona Berner, Tobias Eklund, Louisa E. Kraft, Aliaksandr Leonau, Fabian Westermeier, Michael Sprung, Christian Gutt, Katrin Amann-Winkel, Fivos Perakis
Coherent X-rays reveal anomalous molecular diffusion and cage effects in crowded protein solutions
Nature Communications· 2025DOI
Anita Girelli, Maddalena Bin, Mariia Filianina, Michelle Dargasz, Nimmi Das Anthuparambil, Johannes Möller, Alexey Zozulya, Iason Andronis, Sonja Timmermann, Sharon Berkowicz, Sebastian Retzbach, Mar
Nature Communications
Nature Communications· 2024DOI
Sharon Berkowicz; Iason Andronis; Anita Girelli; Mariia Filianina; Maddalena Bin; Kyeongmin Nam; Myeongsik Shin; Markus Kowalewski; Tetsuo Katayama; Nicolas Giovambattista; Kyung Hwan Kim; Fivos Perak
Deliverables (1)
Data Management Plan